XLOC_016049


Basic Information

Item Value
gene id XLOC_016049
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 405330 ~ 458911 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033752
GCATGAAGAGGTTTGGAGGAAACCCAGAGCCATGAAGAGTCTGAACACAGCAGAGAGATAAGTatgaccGTAGTTCTGCTTCATCATGACTCCAGACTGCTGAAACTCATCTACAAGCTCATCATCACAGATCTTTAGTCCAGATGGAGGATGTACATTTTGTGCATGTAGCGCAGGCCTTCGCAGATCTGCCGGATGAACATCACCGTGTCCAGCTCCGTCAGCTTGTAGTTTTCATCAATGATCCTGTCGAAGAGCTCGCCTCCGTCAacactggacacacacacacagACCTGCAGTGGACATTTGACACTAACAGTGCTGTGAACAATGGGATC
>TCONS_00033753
CCAACAGCTTTAATACTAGCATGAAGAGGTTTGGAGGAAACCCAGAGCCATGAAGAGTCTGAACACAGCAGAGAGATAAGTatgaccGTAGTTCTGCTTCATCATGACTCCAGACTGCTGAAACTCATCTACAAGCTCATCATCACAGATCTTTAGTCCAGATGGAGGATGTACATTTTGTGCATGTAGCGCAGGCCTTCGCAGATCTGCCGGATGAACATCACCGTGTCCAGCTCCGTCAGCTTGTAGTTTTCATCAATGATCCTGTCGAAGAGCTCGCCTCCGTCAacactggacacacacacacagACTATACCCATGACAACTCCAGTGAAACAATAGGATAAATCGAGGTTCAATAGGCGGACCCAATTCTCATGTGGGGACTCGATTTCTCAAGACACCGTCTGTATGGAGCTTCTGCGTCTGCTGCTCCGAGCGCTGGTTCACCGCCAGCATGATGCTGTTCATTTCTTCACACATTTCCTTCATCTGGTTGCCTGTGCCGGTGCGGATCACCGGAGGGAAGTGGATCTCCTCCTTTTCTACTTTCAGCGTTTCTACGTCTCTTTCGATTCCGTCGATGTCCTGAGACATGCCGTCCAGTCGGCTGAGCACTTTTTCCTGGATACTAATCAGCCGGTCCATTTTACTGCTCAAAGACTCAATCCTAACCTGGAGCAGGTCCATGCCTGTGTTTGCGTCAGCAGAACTCATGGTACGTCAGCGTAAAACCAAAGAGACAAGAACAGGGAAACCTTACAATGGAGTGGATGAATGTGTAGATGAAGCCAAGTATTCAAAAAGGAGACCAAATCCAGTGGACAAAATCATGTTAAATCCCTTGATAACCAAATAATCCGTCCATTTCTTTCTCCCTCTCCATTGACGGACTCTGCAAACTGCGGCTCATATTAAGAATGGAATGAGCCGGTCTCAGGAAATGTAAGTGGTACAGTGGGGTTTACGTCAGCAGGTCCTGAGGAGGGGCTATGTTTGGCTCCGGGACTGCCGTCTGATATTGGAGACGCTTTAAAGCCATGTCAGATTCCTGCCCGCCAGGTGTCACAGGGGCCCCGGAGACACTCGCTTTCCCGAAACGGCTGCTCACAGAATCAACGGAAAGAAACTTGAGGACTGACTTATCTTTCACCTTGAGAGGTTCGGTCGGAGATGTGGCATGTGAAGAGTTTATGTTGATGGAATTTTCCAGAAATTCCAAGAGCTCATATATTGAAAGAAATGAAGACAAGTAGTGTGTGAAGAGGTCATTGGAAAAGGCCTAGCATTGAACCGTATTAAAAGTATGGTTTTTAACTTGTGTCAGTTCTGATTCGCTCTCCAGTTCCAGAAAAGTCTTACTCATCTGCAATCCAG
>TCONS_00033754
CCTGCCAACAGCTTTAATACTAGCATGAAGAGGTTTGGAGGAAACCCAGAGCCATGAAGAGTCTGAACACAGCAGAGAGATAAGTatgaccGTAGTTCTGCTTCATCATGACTCCAGACTGCTGAAACTCATCTACAAGCTCATCATCACAGATCTTTAGTCCAGATGGAGGATGTACATTTTGTGCATGTAGCGCAGGCCTTCGCAGATCTGCCGGATGAACATCACCGTGTCCAGCTCCGTCAGCTTGTAGTTTTCATCAATGATCCTGTCGAAGAGCTCGCCTCCGTCAacactggacacacacacacagCTTCTGCGTCTGCTGCTCCGAGCGCTGGTTCACCGCCAGCATGATGCTGTTCATTTCTTCACACATTTCCTTCATCTGGTTGCCTGTGCCGGTGCGGATCACCGGAGGGAAGTGGATCTCCTCCTTTTCTACTTTCAGCGTTTCTACGTCTCTTTCGATTCCGTCGATGTCCTGAGACATGCCGTCCAGTCGGCTGAGCACTTTTTCCTGGATACTAATCAGCCGGTCCATTTTACTGCTCAAAGACTCAATCCTAACCTGGAGCAGGTCCATGCCTGTGTTTGCGTCAGCAGAACTCATGGTACGTCAGCGTAAAACCAAAGAGACAAGAACAGGGAAACCTTACAATGGAGTGGATGAATGTGTAGATGAAGCCAAGTATTCAAAAAGGAGACCAAATCCAGTGGACAAAATCATGTTAAATCCCTTGATAACCAAATAATCCGTCCATTTCTTTCTCCCTCTCCATTGACGGACTCTGCAAACTGCGGCTCATATTAAGAATGGAATGAGCCGGTCTCAGGAAATGTAAGTGGTACAGTGGGGTTTACGTCAGCAGGTCCTGAGGAGGGGCTATGTTTGGCTCCGGGACTGCCGTCTGATATTGGAGACGCTTTAAAGCCATGTCAGATTCCTGCCCGCCAGGTGTCACAGGGGCCCCGGAGACACTCGCTTTCCCGAAACGGCTGCTCACAGAATCAACGGAAAGAAACTTGAGGACTGACTTATCTTTCACCTTGAGAGGTTCGGTCGGAGATGTGGCATGTGAAGAGTTTATGTTGATGGAATTTTCCAGAAATTCCAAGAGCTCATATATTGAAAGAAATGAAGACAAGTAGTGTGTGAAGAGGTCATTGGAAAAGGCCTAGCATTGAACCGTATTAAAAGTATGGTTTTTAACTTGTGTCAGTTCTGATTCGCTCTCCAGTTCCAGAAAAGTCTTACTCATCTGCAATCCAG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0140029 exocytic process biological_process
GO:0048382 mesendoderm development biological_process
GO:0051640 organelle localization biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033752 False 338 lncRNA 0.49 4 405330 458889
TCONS_00033753 False 1377 lncRNA 0.47 5 405886 458907
TCONS_00033754 True 1273 lncRNA 0.48 4 405886 458911

Neighbor

gene id symbol gene type direction distance location
XLOC_016048 wrnip1 coding downstream 15463 374365 ~ 389867 (-)
XLOC_016047 sharpin coding downstream 40491 354424 ~ 364839 (-)
XLOC_016046 CU693494.1 coding downstream 52551 352097 ~ 352779 (-)
XLOC_016045 NA coding downstream 60571 335852 ~ 344759 (-)
XLOC_016044 MEP1B coding downstream 111537 283764 ~ 293793 (-)
XLOC_016050 NA coding upstream 34012 492923 ~ 532444 (-)
XLOC_016051 NA coding upstream 93570 552481 ~ 614856 (-)
XLOC_016052 CABZ01117963.1 coding upstream 124540 583451 ~ 583567 (-)
XLOC_016053 foxc1a coding upstream 227962 686873 ~ 689047 (-)
XLOC_016054 ftr93 coding upstream 237333 696244 ~ 707152 (-)
XLOC_016043 NA non-coding downstream 123900 281033 ~ 281430 (-)
XLOC_016042 NA non-coding downstream 144164 260035 ~ 261166 (-)
XLOC_016041 NA non-coding downstream 153400 250492 ~ 251930 (-)
XLOC_016057 NA non-coding upstream 269749 728660 ~ 730230 (-)
XLOC_016061 NA non-coding upstream 472157 931068 ~ 1195912 (-)

Expression


Co-expression Network