XLOC_016050


Basic Information

Item Value
gene id XLOC_016050
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 492923 ~ 532444 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033340
TGGTTTCCATACATTCCTGCTGTCTGTGTTTCAGGATGTGTGTCGGTGTGTCAGGATGTGGAGCAACTCTTCCTTCCTGACTGATGAGCAGACACATACTCTGAAAAATAGTGCCATCCATCTACTGTGACACTGAAGCACCCTGGGGAACCCACCACAGCCTCTCCTTATCGTCCTCCCTTCAGAAACAAGATGACATGCTTCAGAGAAATTGATGATCATATGACTTCACCTGCTGCGTGTAACAACTCAAAGCTGATGGCAGAAGTCCAGCTCCACATTTACCTCACACCCTCACTTCCACAAACCACAGCAGCTGTAGACCAAACACAGACGGTCCTGAAGAGGTGAcaaattaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccagcacTGCTATTATGTGTCTAATGGGGACAGAAAAACCTGCAGGACATTTCAGAGACATTGGGTCCAGCTCAGATTTACACTCCTCTTCCTGTTCGTCACGGTCACTGATCTCAAACCAGTGCTTATAAAAAGACACTGCAGTCTGTGCCATGTACTGTACACTGAacaaaaatctgcttttattattttagttaaatcaagtgtacatttctagtcaactTATATCaactaatcattcattcattcattcattttcttttcgacttagtccctttattcatcaggggtcgccacagtgaaatgaacagtCAACTCATCCAGAAGAGATTTTTAAGGGATATAAGAAgca
>TCONS_00033341
TGATTGCAAACGAGCAGAGCTGTGTGTAACTCCCAGCTGTTTCCTTCTTTTAGTTCCTCATCTCGTGGCTGATGAGTAGTCCAGGGGGTGTGATGATGGATTACGCTGACCTGCCGGTGGGTTCTGGAGAACACATCTCTGGATTGCTCCCCAAACTCCCGGAGATCCTGTTTGGGTGGGGAAAATCTCGTTCTTCCACCTCAGTGACTCCAGGAGCCCCCACGGTCAGACTTCTGGACATTGTACATCACAGGCCTCACAAGTGGCAAAGCCAGGGAAACCTACCGCAAAGAAAAAGCAGCAGCCAGAAGGATGTGTGTCGGTGTGTCAGGATGTGGAGCAACTCTTCCTTCCTGACTGATGAGCAGACACATACTCTGAAAAATAGTGCCATCCATCTACTGTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033340 False 757 lncRNA 0.43 2 492923 495440
TCONS_00033341 True 407 lncRNA 0.51 2 495311 532444

Neighbor

gene id symbol gene type direction distance location
XLOC_016049 NA coding downstream 34012 405330 ~ 458911 (-)
XLOC_016048 wrnip1 coding downstream 103056 374365 ~ 389867 (-)
XLOC_016047 sharpin coding downstream 128084 354424 ~ 364839 (-)
XLOC_016046 CU693494.1 coding downstream 140144 352097 ~ 352779 (-)
XLOC_016045 NA coding downstream 148164 335852 ~ 344759 (-)
XLOC_016051 NA coding upstream 20037 552481 ~ 614856 (-)
XLOC_016052 CABZ01117963.1 coding upstream 51007 583451 ~ 583567 (-)
XLOC_016053 foxc1a coding upstream 154429 686873 ~ 689047 (-)
XLOC_016054 ftr93 coding upstream 163800 696244 ~ 707152 (-)
XLOC_016055 foxf2a coding upstream 180636 713080 ~ 716426 (-)
XLOC_016043 NA non-coding downstream 211493 281033 ~ 281430 (-)
XLOC_016042 NA non-coding downstream 231757 260035 ~ 261166 (-)
XLOC_016057 NA non-coding upstream 196216 728660 ~ 730230 (-)
XLOC_016061 NA non-coding upstream 398624 931068 ~ 1195912 (-)
XLOC_016063 NA non-coding upstream 586308 1118752 ~ 1121302 (-)

Expression


Co-expression Network