XLOC_016056 (foxq1a)


Basic Information

Item Value
gene id XLOC_016056
gene name foxq1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 720781 ~ 722170 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031729
CCGCTCGGGATGTCAATGCACTCATCATCTGCAACAGGTAGCTACACCGCCCTGTCACTCTTCGAACTTTCTGAAGCTCTGCCAATGAAACTGGAGGTTTTCTGCGGGAGTCACTACGACTCCAAGCCTGCGGAGTTGTGCAGCGATGCTGAGGGGAGCATCCCATCGCCGGTGTCCGCAGAGGAGGAGCTGGGCTCGGATGGAGACTGCGTGGCGCACAGTCCGGCACCTGTCGCCGACACCAAAGGCAAACCCTACACTCGGAGACCCAAACCTCCATACTCTTACATCGCACTTATCGCCATGGCCATCCGAGACTCCAACTCCGGCCGACTCACTCTAGCCGAAATCAACGACTACCTCATGAAGAAGTTCCCGTTTTTTAGAGGCAGCTACACCGGCTGGAGGAACTCAGTGCGCCATAATCTGTCTCTAAACGACTGCTTTCTTAAGGTCTTAAGGGATCCTTCGAGACCGTGGGGAAAGGACAATTACTGGATGCTGAACCCGCACAGCGAGTACACCTTCGCGGACGGAGTGTTTCGCAGAAGGAGAAAGCGCATTAGTAAAAAAACCGGCAGGGAGCCAGAGGGGCCGGTGCAAACCCACGCATTGGACAGCAATGACTCCATCGCTACGCCTCCTTCGAGCGGAAAGTTCACCAGTTCTTTCGCCATTGAGAGCATCCTCAGTCGACCCTTCAGAAGGGAGGACCGCCCCGTGCTCAGCCCTGACACCTGGCCGGGGGGAGTGGACACTGTGCTGCCGTATGTCATGCTTCGATCCTATGGTGCCCTGGAGGACCCTTCCATGAGCCGCCGACAGCGCGACTTTTTCGCATTCCAGCTGCCGCCTGAGTGCCTCTCAATCCCGCATACGAGCGCGGCGGTGCCCGCGCCTGCAACCGCGGGATATCACCCGTTCAAAATTGACTATTTGTTGTCGTAACATTGGGTACTTTGTGATGGGGAACTTCGGCACTTTCTACAGCACTCGTGACTTGAAAGAGACATTGTGCAAGATACATTTCATTCGACTGCATTTTTAAGAATCGTTCTGAACCTTTAATATGCACCACGAAAACAAGTGAACTCAAAGTTGTGAACTATTTAAGTCTATTCTATTTTGTACTGTCCTACTGAATGATTAAGTCGTTTCCGTgtatttatttgtcatattttgtgtttgttctgtgttAAACCAGCGGTGCCTCAAACGATGATGCCTTCATTTCAGATTTAATACTCAAGATGAACTATATGAGAGGCGAGCTCAGTTTGTGAGGCTCCTGCATCAAACTTGTAAACTGGAATTGTTTAAGCAATTGTTTTTCTGACAAAATGCACGCGCATTTTATATTGAACaataaaattgtttgtttttttaaatg

Function

symbol description
foxq1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within response to xenobiotic stimulus. Predicted to be located in nucleus. Is expressed in gut; head; inter-frontal joint; and mesenchymal cell. Orthologous to human FOXQ1 (forkhead box Q1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-74 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within response to xenobiotic stimulus. Predicted to be located in nucleus. Is expressed in gut; head; inter-frontal joint; and mesenchymal cell. Orthologous to human FOXQ1 (forkhead box Q1).

Ensembl:

ensembl_id ENSDARG00000030896

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031729 True 1390 mRNA 0.50 1 720781 722170

Neighbor

gene id symbol gene type direction distance location
XLOC_016055 foxf2a coding downstream 4355 713080 ~ 716426 (-)
XLOC_016054 ftr93 coding downstream 13629 696244 ~ 707152 (-)
XLOC_016053 foxc1a coding downstream 31734 686873 ~ 689047 (-)
XLOC_016051 NA coding downstream 105925 552481 ~ 614856 (-)
XLOC_016052 CABZ01117963.1 coding downstream 137214 583451 ~ 583567 (-)
XLOC_016057 NA coding upstream 6490 728660 ~ 730230 (-)
XLOC_016058 CU861459.1 coding upstream 9321 731491 ~ 732864 (-)
XLOC_016059 irf4a coding upstream 132274 854444 ~ 879800 (-)
XLOC_016060 dusp22b coding upstream 159784 881954 ~ 898899 (-)
XLOC_016061 NA coding upstream 208898 931068 ~ 1195912 (-)
XLOC_016050 NA non-coding downstream 188337 492923 ~ 532444 (-)
XLOC_016049 NA non-coding downstream 261870 405330 ~ 458911 (-)
XLOC_016046 CU693494.1 non-coding downstream 368002 352097 ~ 352779 (-)
XLOC_016063 NA non-coding upstream 396582 1118752 ~ 1121302 (-)
XLOC_016067 NA non-coding upstream 592996 1315166 ~ 1331542 (-)
XLOC_016069 NA non-coding upstream 683341 1405511 ~ 1406153 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_14722691_14723147 NA misc CI01000004 null 14722581 ~ 14723237 (-)
grasscarp (Ctenopharyngodon idella) CI01000098_01220800_01221705 FOXQ1 coding CI01000098 null 1220166 ~ 1222166 (+)
mexican tetra (Astyanax mexicanus) G29155 foxq1 unknown NC_035899.1 CM008302.1 58417394 ~ 58418817 (+)