CI01000098_01220800_01221705 (FOXQ1)


Basic Information

Item Value
gene id CI01000098_01220800_01221705
gene name FOXQ1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000098
NCBI id null
chromosome length 3223972
location 1220166 ~ 1222166 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000098_01220800_01221705.mRNA
CCATAAAAAGTCTAGCAAAGATCACAAACAAAACAGGTTTGTCCTTATGATTAAGCCAATTCTAATTATTTTATAGAATCAGGACTGTACTGACTATACGTAAATGCTTTTGTTGACTGCACGGCTACCTGTGTCATGTCTGATAAACGCACGCCACCTGGTTTCCCGACAAGAAATTCTTCTAGGAGTGCGCAAAGGTGAGCAAAGACGCAGGTGAACCCACCTTACTGTGACGAAACTCGGTTGAAATCAACAAAGTAATTCATCATAAGTCTAAATGATATTTGTCCACATATGCTCGACCGCTTTATTTCAAAACAGGGTGTGCATGATCCTTGTGTGTTTTTGTAAGATTGATTTTAAGACTTAAAGACAGCTCATGAGGCCCCGCCCCCTGTAGGCATACCCGGAGGTGAGCTGCTATATTAGACAGCTGAGCGCCCGCTCGGGATGTTAAGTGCACTTATCTGCAGCAGGTACAGGTCCTGTCACTCTCACACTTGGGATTGTGTTTGACAGCGCCGCGTGGCTATTCTAGCTCTGAAGTGACTTTTTTTTCTCGAGTTTTTGGGGAACTTTTTCAGCAGAGAGACTTGTGGGAACAGTTAAAATTGTCACAAAGTCACGTCTGCAAATGAAGCTGGAAGTTTTCTGTGGGGGTCACTACGACTCCAAGCCCGTGGAGCTCTGCAGCGACGCAGAGGGCAGCATCCCGTCTCCGATGTCTGCGGAGGAAGAGCTGGGCTCGGATGGAGACTGCGTGGCGCACAGTCCGGCACCTGTTCCTCCGGGCGCTGAGAGCAAAGGCAAGCCCTATACCCGGAGACCCAAGCCCCCGTACTCTTACATCGCTTTGATTGCCATGGCTATCCGGGACTCGGACTCGGGCCGTCTCACTTTAGCCGAAATCAATGACTACCTCATGAAAAAGTTCCCGTTTTTTAGAGGCAGCTACACCGGCTGGAGGAACTCGGTGCGCCACAATCTGTCTCTAAACGACTGCTTTCTGAAGGTGCTTCGGGATCCTTCCAGACCGTGGGGCAAAGACAACTACTGGATGCTGAATCCGCACAGCGAATACACCTTTGCGGACGGAGTGTTTCGTCGAAGGAGAAAGCGCATCAACAAAAAAACAGGCAAGGAGCCAGAGGGGCCGAGCCAAGCTGCTGCAGTGGACACCAGGGACTCTATCGTTACGCCTCCTTCCAGCGCCAAGTTTACGAGTTCTTTCGCCATTGACAGCATCCTCAGCCGACCTTTCAGGAAAGAGGAACGCCCCGTTCACAAACCTGACACCTGGCAAGGGGGAGTGGACATGTTGCCTTATGTCATGCGGGGCTCCCCTGTCGCTCTCACTCACACGCAGGTGCTTCGATCCTACGGGTCCCCCGAGGACCCTGCCATCAGCTACCGTCACCAACGAGACTTTTTCCCTTTCCAGCTGACATCCGATTGTCTCTCGATCCCACACACCACAGCAGTAGCACCCGTGCCAGCGTCTGCATATAGCCCGTTCAAGATTGACTATTTGTTGTCATAATATTGGGTGGGTCTTGGGTGGGGAACTTCGGCACTTTCTGAGCACTTGTGACTTGACAAAGACATTTTGCAAAACACATTTCATCCGCCTGCATAAATCGCCTTTTGGTAAATCGTTCGGAAAGTTTTATGCAAAATGAAAAGGAGTGAACACAAAGTTGTGAACTATTTAATATACTATTTTTATTGTGCTACTGAACGGTTGTGTTGTTCTAAGTTGTTTTCAATGTATTTATTTGTCATTTGTGTTTAAGTGTGTTGAACCAGGTGCCTCAAACGATTCTTATAAAAGTAAAATAAGATAGGCTTGTATTCATTTCAGATTTACTATTCAAGATGAACTATTCGAGAGACAAACTCAGTTTGACTTCTTATATGAAAAGTGAGGCTCCTGCATCAATCTCGTTAACTGGAATTAATGTATATGTACTGACAGAATGCATGCACATTTTATATTGAATA

Function

symbol description
foxq1 Enables sequence-specific double-stranded DNA binding activity. Involved in negative regulation of neuron apoptotic process. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
Zgc:162905 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000098_01220800_01221705.mRNA True 2001 mRNA 0.47 1 1220166 1222166

Neighbor

gene id symbol gene type direction distance location
CI01000098_01176785_01212612 NA coding upstream 6799 1176687 ~ 1213367 (+)
CI01000098_01084929_01096605 IRF4A, IRF4 coding upstream 122246 1084929 ~ 1097920 (+)
CI01000098_01071463_01072189 NA coding upstream 147738 1071463 ~ 1072428 (+)
CI01000098_00996891_01000102 NA coding upstream 219891 996891 ~ 1000275 (+)
CI01000098_00987638_00993102 NA coding upstream 227064 987638 ~ 993102 (+)
CI01000098_01226066_01228884 FOXF2, FOXF2A coding downstream 3338 1225504 ~ 1229008 (+)
CI01000098_01280234_01281476 NA coding downstream 58068 1280234 ~ 1281916 (+)
CI01000098_01294815_01296281 FOXC1.S, FOXC1, FOXC1A coding downstream 70902 1293068 ~ 1296756 (+)
CI01000098_01491396_01493506 NA coding downstream 268948 1491114 ~ 1493824 (+)
CI01000098_01617418_01644911 WRNIP1 coding downstream 394889 1617055 ~ 1645859 (+)
G313430 NA non-coding upstream 208138 1010317 ~ 1012028 (+)
G313438 NA non-coding upstream 239373 979392 ~ 980793 (+)
G313447 NA non-coding upstream 258655 961278 ~ 961511 (+)
G313457 NA non-coding upstream 261098 958827 ~ 959068 (+)
G313456 NA non-coding upstream 261378 958532 ~ 958788 (+)
G313504 NA non-coding downstream 39476 1261642 ~ 1268236 (+)
G313543 NA non-coding downstream 97780 1319946 ~ 1367497 (+)
G314032 NA non-coding downstream 305975 1528141 ~ 1528525 (+)
G314036 NA non-coding downstream 318110 1540276 ~ 1540483 (+)
G314055 NA non-coding downstream 359943 1582109 ~ 1591005 (+)
G313412 NA other upstream 354219 864629 ~ 865947 (+)
CI01000098_00274963_00275658 NA other upstream 944909 274731 ~ 275712 (+)
G314121 NA other downstream 532974 1755140 ~ 1760972 (+)
G314278 NA other downstream 1007158 2229324 ~ 2234831 (+)
CI01000098_02167217_02267829 NA other downstream 1025950 2167217 ~ 2267829 (+)
G314652 NA other downstream 1979354 3201520 ~ 3204360 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016056 foxq1a coding NC_007113.7 CM002886.2 720781 ~ 722170 (-)