CI01000098_01226066_01228884 (FOXF2, FOXF2A)


Basic Information

Item Value
gene id CI01000098_01226066_01228884
gene name FOXF2, FOXF2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000098
NCBI id null
chromosome length 3223972
location 1225504 ~ 1229008 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000098_01226066_01228884.mRNA
TGATAAATGGCGTTATTGCGTGTATTTAGGTTGTCAGAGGGGAGGTGGGGAGTCTCTCTACTCGGACTCTGCACAGCCTCCTGCCAGACCGATAGCTGGAGGTATGCCAGACATGGAAAGGGGTGGGTCTCCACAGTTTGAGGAGATTTCTTGGAGGAATTTAGTGGGGATCTAGGGGGCAGAAAGAGATTTACGAATTGATAGGTGGTCGCGTTTTGTTTGGCCGCACGTCTTTGCGCCAGAGGACTCTGGAGCATTGAGTTTCCTTCTCTTAAAGGATTAGTCCTCACGATGGCCACCAAGAGACTAAGGAGGGGTCGCTACCCTGGCGACACACAGCTGGTGGCTTCAACGAGGAGCGCGTCCTGCGAGCAGAGCAGAATTTTGGCACACTGACCTCGGCCGCCTTGAAGAGTCATTGGCTTTTAAGGGAGATTTTCTTGGAGTACCTATAGTTTTCTCCTTTATTTTATAGCCTGAGGTGCTTTTGACTGAATCTTTTTCAAGACTGATCCTATCGTTTTACATTCATTCAGCTTCCTTTAGGCTGCAAGGCTTAGCAATGACGACTGAAAGCTCTCAGCAGCAGCTTGACCCGCCGCCTCCCCTCAGATCCAGCCCGACATCCAGTGGTATGCACTCGGCGCTTCAGAGCACACAGACAGTGCTGGAGAGCACAGCTGCGACCGGTAGCAAAGGCAAAAAGTCCAATTCGGGCATGAGGCGCCCCGAAAAGCCACCTTATTCCTATATCGCTCTTATAGTCATGGCGATACAGAGCTCTCCGACCAAAAGGTTGACGCTGAGTGAAATTTATCAGTTCCTCCAGGCTCGCTTCCCGTTTTTTAGAGGTTCCTACCAGGGCTGGAAAAATTCTGTCAGACACAATTTGTCTCTCAACGAATGTTTCATCAAACTTCCCAAGGGCCTCGGGCGGCCGGGTAAAGGCCACTATTGGACCATCGACCCCGGGAGCGAGTTCATGTTCGAGGAGGGCTCTTTTCGACGCAGGCCCCGCGGTTTCCGAAGGAAATGTCAGGCTCTCAAACCCATGTACCGCATGATGAACGGAATCGGCTTCGGCGCTTCCATGCTGCCGCAAAACTTTGACTTCCAGTCGCCCTCCTCGTCCCTGGCCTGCCACGCCAATGGCTATAATCTGGACATGATGACCAACGCGGTGCCTGGCGTTCACGCGGGATACGATGGCCTTAGTGCAGGTCATCATGTCTCACACATGTCACCAAGTCCGGGCTCCACGTACATGACGGCATGCCAAGTCGCTTCCAACGGCGAGTACGGCCCAGACAGCAGCAACAGCCCGCTTCACTCACCCCCGGCGATGAGCGGCTCTCTGGAGTGCCATTCGCCGTATGGAGCCGCCTCGGCACATTGGGCTTCATCAGGCGTGTCTCCTTATATTAAACAGCAGCCACTAACTTCCAGCAGCCCGACCTCCTCTGGATTACACTCGAGTATGCCTCCGTATTCTCTGGAGCAAAGCTATCTCCATCACAACGGCAGAGACTCGGCCGACATCTCAGTGGATCCTATTATCATCATCAGCTTCATCATCACCAAGGAGTCTGTCAAGATGTAAAGCCGTGCGTTATGTAATTTAAACTATGACAAGCAGGGGAGGGGGAGAATAATACATCTAAAGTACGGACTGAGCTCGCAAGTTACGAGATTGTGTGTGCTTGATGCACGGTTCTCTACGAAGA

Function

symbol description
foxf2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ morphogenesis and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in head mesenchyme; neural tube; pharyngeal arch 1; and pharyngeal arch 2. Orthologous to human FOXF2 (forkhead box F2).
foxf2 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including genitalia development; regulation of cellular protein metabolic process; and roof of mouth development. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleus. Part of transcription regulator complex.

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000098_01226066_01228884.mRNA True 1724 mRNA 0.52 2 1225504 1229008

Neighbor

gene id symbol gene type direction distance location
CI01000098_01220800_01221705 FOXQ1 coding upstream 3338 1220166 ~ 1222166 (+)
CI01000098_01176785_01212612 NA coding upstream 12137 1176687 ~ 1213367 (+)
CI01000098_01084929_01096605 IRF4A, IRF4 coding upstream 127584 1084929 ~ 1097920 (+)
CI01000098_01071463_01072189 NA coding upstream 153076 1071463 ~ 1072428 (+)
CI01000098_00996891_01000102 NA coding upstream 225229 996891 ~ 1000275 (+)
CI01000098_01280234_01281476 NA coding downstream 51226 1280234 ~ 1281916 (+)
CI01000098_01294815_01296281 FOXC1.S, FOXC1, FOXC1A coding downstream 64060 1293068 ~ 1296756 (+)
CI01000098_01491396_01493506 NA coding downstream 262106 1491114 ~ 1493824 (+)
CI01000098_01617418_01644911 WRNIP1 coding downstream 388047 1617055 ~ 1645859 (+)
CI01000098_01732302_01733453 NA coding downstream 503250 1732258 ~ 1733530 (+)
G313430 NA non-coding upstream 213476 1010317 ~ 1012028 (+)
G313438 NA non-coding upstream 244711 979392 ~ 980793 (+)
G313447 NA non-coding upstream 263993 961278 ~ 961511 (+)
G313457 NA non-coding upstream 266436 958827 ~ 959068 (+)
G313456 NA non-coding upstream 266716 958532 ~ 958788 (+)
G313504 NA non-coding downstream 32634 1261642 ~ 1268236 (+)
G313543 NA non-coding downstream 90938 1319946 ~ 1367497 (+)
G314032 NA non-coding downstream 299133 1528141 ~ 1528525 (+)
G314036 NA non-coding downstream 311268 1540276 ~ 1540483 (+)
G314055 NA non-coding downstream 353101 1582109 ~ 1591005 (+)
G313412 NA other upstream 359557 864629 ~ 865947 (+)
CI01000098_00274963_00275658 NA other upstream 950247 274731 ~ 275712 (+)
G314121 NA other downstream 526132 1755140 ~ 1760972 (+)
G314278 NA other downstream 1000316 2229324 ~ 2234831 (+)
CI01000098_02167217_02267829 NA other downstream 1019108 2167217 ~ 2267829 (+)
G314652 NA other downstream 1972512 3201520 ~ 3204360 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016055 foxf2a coding NC_007113.7 CM002886.2 713080 ~ 716426 (-)