G313543


Basic Information

Item Value
gene id G313543
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000098
NCBI id null
chromosome length 3223972
location 1319946 ~ 1367497 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU356477
CTCAGCGTCATATCCAGAGGTTGTGTTTGGGAAATAGATGTATGAGTGCTGCCAGCATTGCTGCAGAGGTTGAAGGGGTGGGGGGTCAGCCTGTCAGTGCTCAGACCATACGCCGCACACTGTATCAAATTGGTCTGCATGGCTGTCGTCCCAGAAGGAAGCCTCTTCTAAAGATGATGCACAAGAAAGCCCGCAAACAGTTTGCTGAAGACAAGCAGACTAAGGACATGGATTACTGGAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU356477 True 242 lncRNA 0.50 2 1319946 1367497

Neighbor

gene id symbol gene type direction distance location
CI01000098_01294815_01296281 FOXC1.S, FOXC1, FOXC1A coding upstream 23190 1293068 ~ 1296756 (+)
CI01000098_01280234_01281476 NA coding upstream 38030 1280234 ~ 1281916 (+)
CI01000098_01226066_01228884 FOXF2, FOXF2A coding upstream 90938 1225504 ~ 1229008 (+)
CI01000098_01220800_01221705 FOXQ1 coding upstream 97780 1220166 ~ 1222166 (+)
CI01000098_01176785_01212612 NA coding upstream 106579 1176687 ~ 1213367 (+)
CI01000098_01491396_01493506 NA coding downstream 123617 1491114 ~ 1493824 (+)
CI01000098_01617418_01644911 WRNIP1 coding downstream 249558 1617055 ~ 1645859 (+)
CI01000098_01732302_01733453 NA coding downstream 364761 1732258 ~ 1733530 (+)
CI01000098_01788449_01870321 CACNA1E coding downstream 420845 1788342 ~ 1870814 (+)
CI01000098_01875234_01882514 RPB4, POLR2D, BRAFLDRAFT_113736, POLR2D.L coding downstream 507118 1874547 ~ 1882663 (+)
G313504 NA non-coding upstream 51710 1261642 ~ 1268236 (+)
G313430 NA non-coding upstream 307918 1010317 ~ 1012028 (+)
G313438 NA non-coding upstream 339153 979392 ~ 980793 (+)
G313447 NA non-coding upstream 358435 961278 ~ 961511 (+)
G313457 NA non-coding upstream 360878 958827 ~ 959068 (+)
G314032 NA non-coding downstream 160644 1528141 ~ 1528525 (+)
G314036 NA non-coding downstream 172779 1540276 ~ 1540483 (+)
G314055 NA non-coding downstream 214612 1582109 ~ 1591005 (+)
G314070 NA non-coding downstream 281442 1648939 ~ 1649161 (+)
G314075 NA non-coding downstream 281966 1649463 ~ 1649714 (+)
G313412 NA other upstream 453999 864629 ~ 865947 (+)
CI01000098_00274963_00275658 NA other upstream 1044689 274731 ~ 275712 (+)
G314121 NA other downstream 387643 1755140 ~ 1760972 (+)
G314278 NA other downstream 861827 2229324 ~ 2234831 (+)
CI01000098_02167217_02267829 NA other downstream 880619 2167217 ~ 2267829 (+)
G314652 NA other downstream 1834023 3201520 ~ 3204360 (+)

Expression


Co-expression Network