RNA id: CI01000098_01220800_01221705.mRNA


Basic Information

Item Value
RNA id CI01000098_01220800_01221705.mRNA
length 2001
RNA type mRNA
GC content 0.47
exon number 1
gene id CI01000098_01220800_01221705
representative True

Chromosome Information

Item Value
chromosome id CI01000098
NCBI id null
chromosome length 3223972
location 1220166 ~ 1222166 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATAAAAAGTCTAGCAAAGATCACAAACAAAACAGGTTTGTCCTTATGATTAAGCCAATTCTAATTATTTTATAGAATCAGGACTGTACTGACTATACGTAAATGCTTTTGTTGACTGCACGGCTACCTGTGTCATGTCTGATAAACGCACGCCACCTGGTTTCCCGACAAGAAATTCTTCTAGGAGTGCGCAAAGGTGAGCAAAGACGCAGGTGAACCCACCTTACTGTGACGAAACTCGGTTGAAATCAACAAAGTAATTCATCATAAGTCTAAATGATATTTGTCCACATATGCTCGACCGCTTTATTTCAAAACAGGGTGTGCATGATCCTTGTGTGTTTTTGTAAGATTGATTTTAAGACTTAAAGACAGCTCATGAGGCCCCGCCCCCTGTAGGCATACCCGGAGGTGAGCTGCTATATTAGACAGCTGAGCGCCCGCTCGGGATGTTAAGTGCACTTATCTGCAGCAGGTACAGGTCCTGTCACTCTCACACTTGGGATTGTGTTTGACAGCGCCGCGTGGCTATTCTAGCTCTGAAGTGACTTTTTTTTCTCGAGTTTTTGGGGAACTTTTTCAGCAGAGAGACTTGTGGGAACAGTTAAAATTGTCACAAAGTCACGTCTGCAAATGAAGCTGGAAGTTTTCTGTGGGGGTCACTACGACTCCAAGCCCGTGGAGCTCTGCAGCGACGCAGAGGGCAGCATCCCGTCTCCGATGTCTGCGGAGGAAGAGCTGGGCTCGGATGGAGACTGCGTGGCGCACAGTCCGGCACCTGTTCCTCCGGGCGCTGAGAGCAAAGGCAAGCCCTATACCCGGAGACCCAAGCCCCCGTACTCTTACATCGCTTTGATTGCCATGGCTATCCGGGACTCGGACTCGGGCCGTCTCACTTTAGCCGAAATCAATGACTACCTCATGAAAAAGTTCCCGTTTTTTAGAGGCAGCTACACCGGCTGGAGGAACTCGGTGCGCCACAATCTGTCTCTAAACGACTGCTTTCTGAAGGTGCTTCGGGATCCTTCCAGACCGTGGGGCAAAGACAACTACTGGATGCTGAATCCGCACAGCGAATACACCTTTGCGGACGGAGTGTTTCGTCGAAGGAGAAAGCGCATCAACAAAAAAACAGGCAAGGAGCCAGAGGGGCCGAGCCAAGCTGCTGCAGTGGACACCAGGGACTCTATCGTTACGCCTCCTTCCAGCGCCAAGTTTACGAGTTCTTTCGCCATTGACAGCATCCTCAGCCGACCTTTCAGGAAAGAGGAACGCCCCGTTCACAAACCTGACACCTGGCAAGGGGGAGTGGACATGTTGCCTTATGTCATGCGGGGCTCCCCTGTCGCTCTCACTCACACGCAGGTGCTTCGATCCTACGGGTCCCCCGAGGACCCTGCCATCAGCTACCGTCACCAACGAGACTTTTTCCCTTTCCAGCTGACATCCGATTGTCTCTCGATCCCACACACCACAGCAGTAGCACCCGTGCCAGCGTCTGCATATAGCCCGTTCAAGATTGACTATTTGTTGTCATAATATTGGGTGGGTCTTGGGTGGGGAACTTCGGCACTTTCTGAGCACTTGTGACTTGACAAAGACATTTTGCAAAACACATTTCATCCGCCTGCATAAATCGCCTTTTGGTAAATCGTTCGGAAAGTTTTATGCAAAATGAAAAGGAGTGAACACAAAGTTGTGAACTATTTAATATACTATTTTTATTGTGCTACTGAACGGTTGTGTTGTTCTAAGTTGTTTTCAATGTATTTATTTGTCATTTGTGTTTAAGTGTGTTGAACCAGGTGCCTCAAACGATTCTTATAAAAGTAAAATAAGATAGGCTTGTATTCATTTCAGATTTACTATTCAAGATGAACTATTCGAGAGACAAACTCAGTTTGACTTCTTATATGAAAAGTGAGGCTCCTGCATCAATCTCGTTAACTGGAATTAATGTATATGTACTGACAGAATGCATGCACATTTTATATTGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU356338 lncRNA upstream 208138 1010317 ~ 1012028 (+) False G313430
TU356339 lncRNA upstream 208138 1010317 ~ 1012028 (+) True G313430
TU356348 lncRNA upstream 239373 979392 ~ 980793 (+) True G313438
TU356357 lncRNA upstream 258655 961278 ~ 961511 (+) True G313447
TU356367 lncRNA upstream 261098 958827 ~ 959068 (+) True G313457
TU356433 lncRNA downstream 39476 1261642 ~ 1268236 (+) True G313504
TU356477 lncRNA downstream 97780 1319946 ~ 1367497 (+) True G313543
TU357038 lncRNA downstream 305975 1528141 ~ 1528525 (+) True G314032
TU357042 lncRNA downstream 318110 1540276 ~ 1540483 (+) True G314036
TU357063 lncRNA downstream 359943 1582109 ~ 1591005 (+) False G314055
CI01000098_01176785_01212612.mRNA mRNA upstream 6799 1176687 ~ 1213367 (+) True CI01000098_01176785_01212612
CI01000098_01084929_01096605.mRNA mRNA upstream 122246 1084929 ~ 1097920 (+) True CI01000098_01084929_01096605
CI01000098_01071463_01072189.mRNA mRNA upstream 147738 1071463 ~ 1072428 (+) True CI01000098_01071463_01072189
CI01000098_00996891_01000102.mRNA mRNA upstream 219891 996891 ~ 1000275 (+) True CI01000098_00996891_01000102
CI01000098_00987638_00993102.mRNA mRNA upstream 227064 987638 ~ 993102 (+) True CI01000098_00987638_00993102
CI01000098_01226066_01228884.mRNA mRNA downstream 3338 1225504 ~ 1229008 (+) True CI01000098_01226066_01228884
CI01000098_01280234_01281476.mRNA mRNA downstream 58068 1280234 ~ 1281916 (+) True CI01000098_01280234_01281476
CI01000098_01294815_01296281.mRNA mRNA downstream 70902 1293068 ~ 1296756 (+) True CI01000098_01294815_01296281
CI01000098_01491396_01493506.mRNA mRNA downstream 268948 1491114 ~ 1493824 (+) True CI01000098_01491396_01493506
CI01000098_01617418_01644911.mRNA mRNA downstream 394889 1617055 ~ 1645859 (+) True CI01000098_01617418_01644911
TU356314 other upstream 354219 864629 ~ 865947 (+) True G313412
TU355878 other upstream 944909 274894 ~ 275257 (+) True CI01000098_00274963_00275658
TU357149 other downstream 532974 1755140 ~ 1760972 (+) True G314121
TU357319 other downstream 1007158 2229324 ~ 2234831 (+) True G314278
TU357314 other downstream 1025950 2248116 ~ 2263245 (+) True CI01000098_02167217_02267829
TU357775 other downstream 1979354 3201520 ~ 3204360 (+) True G314652

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031729 True 1390 mRNA 0.50 1 NC_007113.7 720781 ~ 722170 (-)