RNA id: CI01000098_01491396_01493506.mRNA



Basic Information


Item Value
RNA id CI01000098_01491396_01493506.mRNA
length 1122
RNA type mRNA
GC content 0.44
exon number 3
gene id CI01000098_01491396_01493506
representative True

Chromosome Information


Item Value
chromosome id CI01000098
NCBI id null
chromosome length 3223972
location 1491114 ~ 1493824 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATAAAAGGGTCCTAAAGAAAAAGACACATTTTTTAGTGTAACAACACGCACCCTTATGGTAAAAGACCATCTCGACATTTCCCTGCCTCTACAAACACACACCGTCATTTTTACAAACCACACAGAGCTCTAGACCAAACACAGACAGGAGTGAAAAAGTGACAAATTGAGTGTGTACATCGAGCACTACTATTATGTGTCTAATGGGGGCAGAAAACGTGCCAGGACATTTCAGAGGCATCAACTTGAGCTCAGATTTACGGTTCTCTTCCTGTCCGTCATGGTCAGTGACCTCAGAGCCAGCGGTTATAAAAAGACAGATAAGTTTCCCACAGGCTGGCACTATAGTCTGTGTCAAATACAGCTGTCCAAAAATGAGTGGATAGCAGCAAAACCTCAGTTTTCCTTCTTTGACTCCTTTTCCTCGTGTTCCTGGAAGGCTCGACCATTCCACTCAGTGGAATATGAGCCACACGCAGGGCCCACATATGCATCCTGTTCTAGACCTGCCTGCGCGCTGATGATCCGAGACCAGCTGTGCCGTTCCATTATGAATGCTCCGACTCTGAGTTTAAAGAGCCGCAGGAACCCGGTGAGAAGGCCCTCGGTGATGGGGTCATTCCTCCCGTCTGCTGAGGTGTCAGGAAAAACAATTCTGAAGTGCTTTAAAACTTCTGGCCCTTCCTGCTCATTGCAGCTGGCACACCCAGGAGATAACGAGCCTTTCAAGCGTGTGTGTGTTCGAGTTAGTATTCATGAGTGTATCTGTTTGTGTTTGGACTACTTTAAGGTTGTTCACTGACAAATACTTGGAGCTCAAGGACGTGTTTACCTGCCCTTGTTGTGTCGGTGCTAAGATAATGTTATTGTGTGTTAACCTTGAAAAACCAATAGACAGGATCCTTGCTCTTGACACATTAGAGAGTGACTGTAATCAATTTCAGTTGTTTGTAAAGGGCAAAGGTTATCATACTATAACCTCTAATCACTCTTGAGCAGTTTACGATTAGAAACGCAATGCCGTGCCATTTTTGCGTACCCATCTTTCATGTGGCAAAATACTTATAAAGTAAGGTATTTCTTGTAAATCTTGTTTTTTTTTTTTTGCTGTTATCATGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU356477 lncRNA upstream 123617 1319946 ~ 1367497 (+) True G313543
TU356433 lncRNA upstream 222878 1261642 ~ 1268236 (+) True G313504
TU356338 lncRNA upstream 479086 1010317 ~ 1012028 (+) False G313430
TU356339 lncRNA upstream 479086 1010317 ~ 1012028 (+) True G313430
TU356348 lncRNA upstream 510321 979392 ~ 980793 (+) True G313438
TU357038 lncRNA downstream 34317 1528141 ~ 1528525 (+) True G314032
TU357042 lncRNA downstream 46452 1540276 ~ 1540483 (+) True G314036
TU357063 lncRNA downstream 88285 1582109 ~ 1591005 (+) False G314055
TU357069 lncRNA downstream 88285 1582109 ~ 1591005 (+) False G314055
TU357067 lncRNA downstream 88911 1582735 ~ 1588665 (+) True G314055
CI01000098_01294815_01296281.mRNA mRNA upstream 194358 1293068 ~ 1296756 (+) True CI01000098_01294815_01296281
CI01000098_01280234_01281476.mRNA mRNA upstream 209198 1280234 ~ 1281916 (+) True CI01000098_01280234_01281476
CI01000098_01226066_01228884.mRNA mRNA upstream 262106 1225504 ~ 1229008 (+) True CI01000098_01226066_01228884
CI01000098_01220800_01221705.mRNA mRNA upstream 268948 1220166 ~ 1222166 (+) True CI01000098_01220800_01221705
CI01000098_01176785_01212612.mRNA mRNA upstream 277747 1176687 ~ 1213367 (+) True CI01000098_01176785_01212612
CI01000098_01617418_01644911.mRNA mRNA downstream 123231 1617055 ~ 1645859 (+) True CI01000098_01617418_01644911
CI01000098_01732302_01733453.mRNA mRNA downstream 238434 1732258 ~ 1733530 (+) True CI01000098_01732302_01733453
CI01000098_01788449_01870321.mRNA mRNA downstream 294518 1788342 ~ 1870814 (+) True CI01000098_01788449_01870321
CI01000098_01875234_01882514.mRNA mRNA downstream 380791 1874615 ~ 1882663 (+) False CI01000098_01875234_01882514
CI01000098_01894500_01898605.mRNA mRNA downstream 400676 1894500 ~ 1898605 (+) True CI01000098_01894500_01898605
TU356314 other upstream 625167 864629 ~ 865947 (+) True G313412
TU355878 other upstream 1215857 274894 ~ 275257 (+) True CI01000098_00274963_00275658
TU357149 other downstream 261316 1755140 ~ 1760972 (+) True G314121
TU357319 other downstream 735500 2229324 ~ 2234831 (+) True G314278
TU357314 other downstream 754292 2248116 ~ 2263245 (+) True CI01000098_02167217_02267829
TU357775 other downstream 1707696 3201520 ~ 3204360 (+) True G314652

Expression Profile