RNA id: TU357042


Basic Information

Item Value
RNA id TU357042
length 208
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G314036
representative True

Chromosome Information

Item Value
chromosome id CI01000098
NCBI id null
chromosome length 3223972
location 1540276 ~ 1540483 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTGACAAAAAAATGGTACATGCAGTCTTTAAATAAATGCACAAAAAAAAAAAAAAATCATTAAGCTGTCATATATGTGTATTCATAAAGTCAAAGGGTAATCTAATAATGTGGTCTAAATTTAAATGTTAGAAAAAGAAATACATTTTAAGACATATTGCCATACCAAAAGTGGACGTTTCTGTAGAATGACCCAGTTACTTAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU357038 lncRNA upstream 11751 1528141 ~ 1528525 (+) True G314032
TU356387 lncRNA upstream 30146 1135953 ~ 1510130 (+) True G313473
TU356477 lncRNA upstream 172779 1319946 ~ 1367497 (+) True G313543
TU356433 lncRNA upstream 272040 1261642 ~ 1268236 (+) True G313504
TU356338 lncRNA upstream 528248 1010317 ~ 1012028 (+) False G313430
TU357063 lncRNA downstream 41626 1582109 ~ 1591005 (+) False G314055
TU357069 lncRNA downstream 41626 1582109 ~ 1591005 (+) False G314055
TU357067 lncRNA downstream 42252 1582735 ~ 1588665 (+) True G314055
TU357087 lncRNA downstream 108456 1648939 ~ 1649161 (+) True G314070
TU357092 lncRNA downstream 108980 1649463 ~ 1649714 (+) True G314075
CI01000098_01491396_01493506.mRNA mRNA upstream 46452 1491114 ~ 1493824 (+) True CI01000098_01491396_01493506
CI01000098_01294815_01296281.mRNA mRNA upstream 243520 1293068 ~ 1296756 (+) True CI01000098_01294815_01296281
CI01000098_01280234_01281476.mRNA mRNA upstream 258360 1280234 ~ 1281916 (+) True CI01000098_01280234_01281476
CI01000098_01226066_01228884.mRNA mRNA upstream 311268 1225504 ~ 1229008 (+) True CI01000098_01226066_01228884
CI01000098_01220800_01221705.mRNA mRNA upstream 318110 1220166 ~ 1222166 (+) True CI01000098_01220800_01221705
CI01000098_01617418_01644911.mRNA mRNA downstream 76572 1617055 ~ 1645859 (+) True CI01000098_01617418_01644911
CI01000098_01732302_01733453.mRNA mRNA downstream 191775 1732258 ~ 1733530 (+) True CI01000098_01732302_01733453
CI01000098_01788449_01870321.mRNA mRNA downstream 247859 1788342 ~ 1870814 (+) True CI01000098_01788449_01870321
CI01000098_01875234_01882514.mRNA mRNA downstream 334132 1874615 ~ 1882663 (+) False CI01000098_01875234_01882514
CI01000098_01894500_01898605.mRNA mRNA downstream 354017 1894500 ~ 1898605 (+) True CI01000098_01894500_01898605
TU356314 other upstream 674329 864629 ~ 865947 (+) True G313412
TU355878 other upstream 1265019 274894 ~ 275257 (+) True CI01000098_00274963_00275658
TU357149 other downstream 214657 1755140 ~ 1760972 (+) True G314121
TU357319 other downstream 688841 2229324 ~ 2234831 (+) True G314278
TU357314 other downstream 707633 2248116 ~ 2263245 (+) True CI01000098_02167217_02267829
TU357775 other downstream 1661037 3201520 ~ 3204360 (+) True G314652

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU354361 False 1061 lncRNA 0.39 2 NC_047613.1 21398197 ~ 21400905 (+)