CI01000098_01894500_01898605 (ABCF3)


Basic Information

Item Value
gene id CI01000098_01894500_01898605
gene name ABCF3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000098
NCBI id null
chromosome length 3223972
location 1894500 ~ 1898605 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000098_01894500_01898605.mRNA
GACGAAGTGTGACTCTGGTCAGCAGCAGATGCTGCTACAGGCTCCAGTGCAGTTATCGCAAGTGTCTGCTGACACAGCATCATCTGCTAATGATGTTCATGGTATCTGGATGATGAAGAGGAATCCAAGTACAACTGTGGATGCCAAGAAACTAGAGAAAGCTGAGGCCAAACTGAAAGCCAAACATGAGCGCAGAAATGAGAAAGACTCACAGAAAACATCATCTGTACTGGTTTTGGAGGAGGCCTCAGCCAGTCAGGCAAGCAATAAGAAAGAAAATCGTGTCGACTCATCTGGGAAGAATCGGAGTTATGACATCCGCATTGAGAATTTTGATGTATCTTTTGGTGAAAGATGTCTGCTGCAGGGCACTGAACTGTCTCTGGCCAGTGGCAGGCGCTACGGTCTTATTGGGCGTAATGGGCTCGGTAAGACCACTCTGTTGAAGATGTTGGCGAGTCGGAGCCTACGCGTCCCTTTGCACATTTCCATTCTGCACGTAGAGCAGGAAGTGGCTGGAGACGACACCGTGGCTCTACAGAGTGTTCTAGAGAGTGACACCGTTCGAGAGGAGCTGCTGAAGGAAGAGCGTTCACTCAATGCACATATCGCGAATGGAACTGCAGATGGGCTAGAAAGTGTCCGTCTTTCTGAAATTTATGCTAAACTGGAAGAAATTGAAGCTGACAAAGCACCTGCCAGAGCATCAGTTATCCTTGCTGGTTTAGGCTTTTCACCCAAAATGCAACAGCAAGCAACCAAGGAGTTTTCTGGAGGCTGGAGGATGAGGTTAGCTTTAGCAAGAGCCCTGTTTGCACGGCCTGATCTTTTGTTACTTGATGAGCCCACAAACATGTTGGATGTAAGAGCCATTCTGTGGCTGGAAAACTATTTACAAACATGGCAGTCCACCATCCTTGTGGTGTCTCACGATCGTAACTTCTTGAATGCCGTGGTAACAGACATCATACACCTGCACTCCCAGCGGCTGGAGAGTTACCGCGGCGATTATGAGAACTTCATCAAGACCAAAGAAGACCGACTAAAGAACCAGCAAAGAGAATATGAAGCTCAGTTACAGTACAGAGAACATATACAG

Function

symbol description
abcf3 Predicted to enable ATP binding activity. Orthologous to human ABCF3 (ATP binding cassette subfamily F member 3).

GO: NA

KEGG:

id description
K06158 ABCF3; ATP-binding cassette, subfamily F, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000098_01894500_01898605.mRNA True 1099 mRNA 0.48 11 1894500 1898605

Neighbor

gene id symbol gene type direction distance location
CI01000098_01875234_01882514 RPB4, POLR2D, BRAFLDRAFT_113736, POLR2D.L coding upstream 11837 1874547 ~ 1882663 (+)
CI01000098_01788449_01870321 CACNA1E coding upstream 23686 1788342 ~ 1870814 (+)
CI01000098_01732302_01733453 NA coding upstream 160970 1732258 ~ 1733530 (+)
CI01000098_01617418_01644911 WRNIP1 coding upstream 248641 1617055 ~ 1645859 (+)
CI01000098_01491396_01493506 NA coding upstream 400676 1491114 ~ 1493824 (+)
CI01000098_01900523_01905648 ABCF3.S, ABCF3 coding downstream 1918 1900523 ~ 1905955 (+)
CI01000098_01960410_01996273 HRH3 coding downstream 61805 1960410 ~ 1996398 (+)
CI01000098_02037636_02051827 NA coding downstream 138995 2037600 ~ 2051846 (+)
CI01000098_02167217_02267829 NA coding downstream 268612 2167217 ~ 2267829 (+)
CI01000098_02304073_02309499 RPE65, RPE65A coding downstream 404450 2303055 ~ 2309573 (+)
G314122 NA non-coding upstream 156475 1730722 ~ 1738025 (+)
G314120 NA non-coding upstream 171950 1722272 ~ 1722550 (+)
G314118 NA non-coding upstream 173939 1720293 ~ 1720561 (+)
G314113 NA non-coding upstream 180025 1713867 ~ 1714475 (+)
G314142 NA non-coding downstream 9936 1908541 ~ 1909070 (+)
G314202 NA non-coding downstream 112772 2011377 ~ 2011594 (+)
G314203 NA non-coding downstream 113225 2011830 ~ 2012374 (+)
G314204 NA non-coding downstream 113898 2012503 ~ 2012717 (+)
G314194 NA non-coding downstream 116985 2015590 ~ 2020393 (+)
G314121 NA other upstream 133528 1755140 ~ 1760972 (+)
G313412 NA other upstream 1028553 864629 ~ 865947 (+)
CI01000098_00274963_00275658 NA other upstream 1619243 274731 ~ 275712 (+)
G314278 NA other downstream 330719 2229324 ~ 2234831 (+)
G314652 NA other downstream 1302915 3201520 ~ 3204360 (+)

Expression


Co-expression Network