XLOC_016234 (tctex1d1)


Basic Information

Item Value
gene id XLOC_016234
gene name tctex1d1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14207559 ~ 14272083 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032016
ATGTCTGATTTAGCAAAAGAGAAAGCACGTCTCCTGAAGAAGCGTGGAAGTTTGTCTTCTCTAGGCAGTCATGAAGTCAGAGCTATTGGCAAAACTAAAGACTCTATTAGCACTTTGTCCTACATGGAAGAGCATGGACATCATGATGATATCCAACGGCCTACAGTACAGATGGAGAACACCTATCGCATCACCCCATCTAGACGCTTCCCAGTTTTAACAGTGAAGGACCTCCTGAAGGATGTGTTGACCAGCTACCTGCAGGAGGAGAAATATGAAACTGAGTTGTGCAGACAGATGACCAAAACCATCACGGAGGTTGTCAAGGCCAGAGTGAAAGATTTGATGATTCCTCGCTATAAGATCATAGTCGTCATCAGCATTGGCCAGATTAAAGACCAGAATATACGCATGGGGAGTCGATGTCTCTGGGATGACAATCATGACAATTTCTCTTCACATATTTTCAAAAATAACTCACTCTTTGCTGCTGCTACCGTTTTTGGTGTTTATTTTGAATGAATGAGTCTTTCAGAATGTCTGTGGGGTTTTAGTGTCTAGTGATTTTCAGTGATTTTTCAGCCAGTGACATATTTACATAATATTGATTGGTCATTTCTGGTTTGGGTAAATGGCCTTTAAAATTTCTTTGTGATGCTACAAATAAACGAATTTAAACCAAATGCGTAAAACTATTCCATTTTCTCAACATCTCTTGAATTAATGCAactggtaaaaataaatattagtttttaaagaTTAAGAAAATGTACttgtgtacatacacacacacacacacacacacacacacagatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcacacaagttgcagtgtgatgtggctgtgtAGTGGCACTTGTGGCAGGTGTGCattgtgtcccaccagtgactGCTACATGtgtaatattgtgtttatacaacagttcaacgacaTGATGgggtatataaaaaagaaaatcaaacacggagagtctcaagaTCCTTTTGTATGAGAAAATACTTTCTGCtgctattcattcacatctgcagctgatgtcagaacagcagaaaccatgaCAGTTCACAAACATTTGTAAACTTtaccgcagtttgtgaataagccgccagggggcacaaaggcacggaatgcgaacggacagaaatagcctatacagcagctttacatatgctactgtgcttgtaaatgagattaaacaataagtcaaag
>TCONS_00032017
GAGAATTTCCGGTTTGTGGAGACGATGCAATTTTTGTAGAATTGAAGATAGAGTTCTGTCGATTTCTCAGAAAAAATGTCTGATTTAGCAAAAGAGAAAGCACGTCTCCTGAAGAAGCGTGGAAGTTTGTCTTCTCTAGGCAGTCATGAAGTCAGAGCTATTGGCAAAACTAAAGACTCTATTAGCACTTTGTCCTACATGGAAGAGCATGGACATCATGATGATATCCAACGGCCTACAGTACAGATGGAGAACACCTATCGCATCACCCCATCTAGACGCTTCCCAGTTTTAACAGTGAAGGACCTCCTGAAGGATGTGTTGACCAGCTACCTGCAGGAGGAGAAATATGAAACTGAGTTGTGCAGACAGATGACCAAAACCATCACGGAGGTTGTCAAGGCCAGAGTGAAAGATTTGATGATTCCTCGCTATAAGATCATAGTCGTCATCAGCATTGGCCAGATTAAAGACCAGAATATACGCATGGGGAGTCGATGTCTCTGGGATGACAATCATGACAATTTCTCTTCACATATTTTCAAAAATAACTCACTCTTTGCTGCTGCTACCGTTTTTGGTGTTTATTTTGAATGAATGAGTCTTTCAGAATGTCTGTGGGGTTTTAGTGTCTAGTGATTTTCAGTGATTTTTCAGCCAGTGACATATTTACATAATATTGATTGGTCATTTCTGGTTTGGGTAAATGGCCTTTAAAATTTCTTTGTGATGCTACAAATAAACGAATTTAAACCAAA
>TCONS_00032018
CCGGTTTGTGGAGACGATGCAATTTTTGTAGAATTGAAGATAGAGTTCTGTCGATTTCTCAGAAAAAATGTCTGATTTAGCAAAAGAGAAAGCACGTCTCCTGAAGAAGCGTGGAAGTTTGTCTTCTCTAGGCAGTCATGAAGTCAGAGCTATTGGCAAAACTAAAGAGTGAGTACTAATTCCTTCGTATAGCAAATCCCATAGTAGTATAAACGTCATTTGCTTT

Function

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-49 Predicted to enable dynein intermediate chain binding activity. Acts upstream of or within cilium assembly. Predicted to be part of cytoplasmic dynein complex. Predicted to be active in cytoplasm. Orthologous to human DYNLT5 (dynein light chain Tctex-type family member 5).

Ensembl:

ensembl_id ENSDARG00000103545

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032016 False 1282 mRNA 0.37 4 14207559 14271874
TCONS_00032017 False 758 mRNA 0.40 5 14208158 14272083
TCONS_00032018 True 226 lncRNA 0.38 2 14271716 14272075

Neighbor

gene id symbol gene type direction distance location
XLOC_016233 CU927934.2 coding downstream 178398 14021956 ~ 14029161 (-)
XLOC_016232 CU927934.1 coding downstream 196901 14009630 ~ 14010658 (-)
XLOC_016231 CU927934.3 coding downstream 198031 14007938 ~ 14009528 (-)
XLOC_016230 NA coding downstream 202617 14002395 ~ 14004942 (-)
XLOC_016229 CABZ01042417.1 coding downstream 320717 13885155 ~ 13886842 (-)
XLOC_016235 sgip1b coding upstream 4556 14276639 ~ 14390627 (-)
XLOC_016236 NA coding upstream 122037 14394120 ~ 14426667 (-)
XLOC_016237 NA coding upstream 166902 14438985 ~ 14440380 (-)
XLOC_016238 pde4bb coding upstream 172193 14444276 ~ 14587224 (-)
XLOC_016239 CT583708.1 coding upstream 217859 14489942 ~ 14491843 (-)
XLOC_016228 NA non-coding downstream 330038 13875695 ~ 13877521 (-)
XLOC_016240 NA non-coding upstream 242083 14514166 ~ 14515594 (-)
XLOC_016242 NA non-coding upstream 392566 14664649 ~ 14676427 (-)

Expression


Co-expression Network