XLOC_016240


Basic Information

Item Value
gene id XLOC_016240
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14514166 ~ 14515594 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033354
AGACACacatgaggaagctcgactcagcTTGGCTTGCAGACAGATAAGGACAGTGATTGCCTGTCATACACCTAAAgaaagaacaggGGCATTAAAGACACAACTATAGTGaacgtgatgaagaaaaattatttggaacaaagaggctggagaAAAAACTGATATGAAGATTTAAGAAATTGATGCAGCACCGCAAGTACCATCACCACCAATGACAATGGCAGGATCCTTAAgaacaccatcaagatgcacagatgctGTACATttcagtacacctatgaacatttacagtccttgTTCAAGTACAGTTGGAGATCAAGACAACTTATTGCAACTcgtcatgtctttcacgactgataaaagttttaaaatcatgtgacgtcataaagcagcaactgtgcctgattctcacaaatcagcaaaaccaaaacagacgtgatgaaattccagatgtaaacacatttgacctttctttgtccaatttgatttggaaaaacttgaaaatcaactaaacgagcagcccgaacaaatgaagaaactggtagcctactttggaATCATTGGTGTTTTCCACTAAGCAGTTTGGTGTGTCCCGGGAAAGCTTTTGGCTCACTTTTTGGCTGAACAAATTAACTGGAGCAGGGCAAACCAAAATGTGGCCTTTCATGCACTCTCCCTTAGGACTGTCTAGTCAATGTAGTGAGGagaaatgtccataccacgccactgataaagaagtggaaaaatgcattacaaggtggcTACAACGTGCTCCTGACAGGGCTGGAGGAAGGAgggaagaagagaaagctaatgtgtcaaatgtctacatcaataatttattttttaaacaacattttaagtgtatt
>TCONS_00033355
aatgtatctgatcaaggGGCATTAAAGACACAACTATAGTGaacgtgatgaagaaaaattatttggaacaaagaggctggagaAAAAACTGATATGAAGATTTAAGAAATTGATGCAGCACCGCAAGTACCATCACCACCAATGACAATGGCAGGATCCTTAAgaacaccatcaagatgcacagatgctGTACATttcagtacacctatgaacatttacagtccttgTTCAAGTACAGTTGGAGATCAAGACAACTTATTGCAACTcgtcatgtctttcacgactgataaaagttttaaaatcatgtgacgtcataaagcagcaactgtgcctgattctcacaaatcagcaaaaccaaaacagacgtgatgaaattccagatgtaaacacatttgacctttctttgtccaatttgatttggaaaaacttgaaaatcaactaaacgagcagcccgaacaaatgaagaaactggtaagtttcTTGCTTATTTCtaagtgttttatgtttatttatttatttatgtgttttttgcttcgtaggtagcctactttggaATCATTGGTGTTTTCCACTAAGCAGTTTGGTGTGTCCCGGGAAAGCTTTTGGCTCACTTTTTGGCTGAACAAATTAACTGGAGCAGGGCAAACCAAAATGTGGCCTTTCATGCACTCTCCCTTAGGACTGTCTAGTC
>TCONS_00033356
AGACACacatgaggaagctcgactcagcTTGGCTTGCAGACAGATAAGGACAGTGATTGCCTGTCATACACCTAAAgaaagaacaggGGCATTAAAGACACAACTATAGTGaacgtgatgaagaaaaattatttggaacaaagaggctggagaAAAAACTGATATGAAGATTTAAGAAATTGATGCAGCACCGCAAGTACCATCACCACCAATGACAATGGCAGGATCCTTAAgaacaccatcaagatgcacagatgctGTACATttcagtacacctatgaacatttacagtccttgTTCAAGTACAGTTGGAGATCAAGACAACTTATTGCAACTcgtcatgtctttgtaagaattcaagacatcactaaatttgtaattgcttaatgcagctagaaagtaaagatcaactagagaatatcagcagtgtctaacccactgttgtatttacacaaGTTGCATGAGAATAAGcaacaggttgatttatactaatttgttatttttcttttttagcacgactgataaaagttttaaaatcatgtgacgtcataaagcagcaactgtgcctgattctcacaaatcagcaaaaccaaaacagacgtgatgaaattccagatgtaaacacatttgacctttctttgtccaatttgatttggaaaaacttgaaaatcaactaaacgagcagcccgaacaaatgaagaaactggtaagtttcTTGCTTATTTCtaagtgttttatgtttatttatttatttatgtgttttttgcttcgtaggtagcctactttggaATCATTGGTGTTTTCCACTAAGCAGTTTGGTGTGTCCCGGGAAAGCTTTTGGCTCACTTTTTGGCTG

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903225 negative regulation of endodermal cell differentiation biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033354 False 869 lncRNA 0.40 5 14514166 14515594
TCONS_00033355 False 691 lncRNA 0.38 2 14514537 14515392
TCONS_00033356 True 856 lncRNA 0.37 2 14514607 14515594

Neighbor

gene id symbol gene type direction distance location
XLOC_016239 CT583708.1 coding downstream 22323 14489942 ~ 14491843 (-)
XLOC_016237 NA coding downstream 73786 14438985 ~ 14440380 (-)
XLOC_016236 NA coding downstream 87499 14394120 ~ 14426667 (-)
XLOC_016235 sgip1b coding downstream 123539 14276639 ~ 14390627 (-)
XLOC_016234 tctex1d1 coding downstream 242083 14207559 ~ 14272083 (-)
XLOC_016241 CABZ01026681.1 coding upstream 139540 14655134 ~ 14656669 (-)
XLOC_016242 NA coding upstream 149055 14664649 ~ 14676427 (-)
XLOC_016243 NA coding upstream 221449 14737043 ~ 14831123 (-)
XLOC_016244 NA coding upstream 273189 14788783 ~ 14789247 (-)
XLOC_016245 si:ch73-366i20.1 coding upstream 274700 14790294 ~ 14798305 (-)
XLOC_016233 CU927934.2 non-coding downstream 485005 14021956 ~ 14029161 (-)
XLOC_016232 CU927934.1 non-coding downstream 503508 14009630 ~ 14010658 (-)
XLOC_016246 NA non-coding upstream 418204 14933798 ~ 14949626 (-)
XLOC_016247 CR788249.2 non-coding upstream 422992 14938586 ~ 14940003 (-)

Expression


Co-expression Network