RNA id: TCONS_00033355


Basic Information

Item Value
RNA id TCONS_00033355
length 691
lncRNA type intronic
GC content 0.38
exon number 2
gene id XLOC_016240
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14514166 ~ 14515594 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatgtatctgatcaaggGGCATTAAAGACACAACTATAGTGaacgtgatgaagaaaaattatttggaacaaagaggctggagaAAAAACTGATATGAAGATTTAAGAAATTGATGCAGCACCGCAAGTACCATCACCACCAATGACAATGGCAGGATCCTTAAgaacaccatcaagatgcacagatgctGTACATttcagtacacctatgaacatttacagtccttgTTCAAGTACAGTTGGAGATCAAGACAACTTATTGCAACTcgtcatgtctttcacgactgataaaagttttaaaatcatgtgacgtcataaagcagcaactgtgcctgattctcacaaatcagcaaaaccaaaacagacgtgatgaaattccagatgtaaacacatttgacctttctttgtccaatttgatttggaaaaacttgaaaatcaactaaacgagcagcccgaacaaatgaagaaactggtaagtttcTTGCTTATTTCtaagtgttttatgtttatttatttatttatgtgttttttgcttcgtaggtagcctactttggaATCATTGGTGTTTTCCACTAAGCAGTTTGGTGTGTCCCGGGAAAGCTTTTGGCTCACTTTTTGGCTGAACAAATTAACTGGAGCAGGGCAAACCAAAATGTGGCCTTTCATGCACTCTCCCTTAGGACTGTCTAGTC

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903225 negative regulation of endodermal cell differentiation biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032026 lncRNA downstream 22694 14489942 ~ 14491843 (-) True XLOC_016239
TCONS_00033790 lncRNA downstream 74157 14438985 ~ 14440380 (-) True XLOC_016237
TCONS_00032023 lncRNA downstream 87870 14394120 ~ 14426667 (-) True XLOC_016236
TCONS_00032018 lncRNA downstream 242462 14271716 ~ 14272075 (-) True XLOC_016234
TCONS_00032015 lncRNA downstream 485376 14021956 ~ 14029161 (-) True XLOC_016233
TCONS_00033791 lncRNA upstream 149257 14664649 ~ 14676427 (-) True XLOC_016242
TCONS_00033792 lncRNA upstream 221651 14737043 ~ 14831123 (-) True XLOC_016243
TCONS_00033357 lncRNA upstream 273391 14788783 ~ 14789247 (-) True XLOC_016244
TCONS_00033358 lncRNA upstream 418406 14933798 ~ 14949626 (-) True XLOC_016246
TCONS_00032031 lncRNA upstream 423194 14938586 ~ 14940003 (-) True XLOC_016247
TCONS_00032019 mRNA downstream 123910 14276639 ~ 14390627 (-) False XLOC_016235
TCONS_00032020 mRNA downstream 127202 14278841 ~ 14387335 (-) False XLOC_016235
TCONS_00032022 mRNA downstream 127202 14278898 ~ 14387335 (-) False XLOC_016235
TCONS_00032021 mRNA downstream 127202 14278898 ~ 14387335 (-) True XLOC_016235
TCONS_00032017 mRNA downstream 242454 14208158 ~ 14272083 (-) False XLOC_016234
TCONS_00032027 mRNA upstream 139742 14655134 ~ 14656669 (-) True XLOC_016241
TCONS_00032028 mRNA upstream 274902 14790294 ~ 14798295 (-) False XLOC_016245
TCONS_00032029 mRNA upstream 275985 14791377 ~ 14798305 (-) False XLOC_016245
TCONS_00032030 mRNA upstream 276559 14791951 ~ 14793343 (-) True XLOC_016245
TCONS_00032032 mRNA upstream 466991 14982383 ~ 14987282 (-) True XLOC_016249
TCONS_00031998 other downstream 1259740 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00031991 other downstream 2289998 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031983 other downstream 2851614 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031958 other downstream 3609358 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 4767106 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00032033 other upstream 479001 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 513254 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032040 other upstream 586711 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032063 other upstream 1993432 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032069 other upstream 2100548 16615940 ~ 16616055 (-) True XLOC_016267

Expression Profile

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