XLOC_016283


Basic Information

Item Value
gene id XLOC_016283
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19379111 ~ 19382322 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033800
CAGAACAAAGACATCAAAGGTGGCCCCCTTGGAGGGCCACGCAGCttttctaagccgcatggacttttcccgccacgctttcttattttccggcaaagtaaactcagtttaaagtttgcgattgTGTTCGCTAGAACTGTTTTACAAACTCAacccatcaagaaggacatcaaaggagtttcatcaggaagagagagacctccagacatgaaagtccagatgCAGCGATGACGGTTTACACTGAAGCCACACCTAAACAATTGCAACAGCAGGGCATCCAGTATGATGTCATCACTTTTACTGAGGAGtagaaacacaacacacacattatttattgacaacatcaacacacacacagacagaagaaTATTTGAAGCTCATCTTAGTTACAAATGACCATCACAAACTGCGCTGATCATAAGTAACACAGACTTCTTCCAGAAAAATCACTCATTTATAAGGTGAATGTACAGTTAGAT

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043049 otic placode formation biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0060788 ectodermal placode formation biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0030916 otic vesicle formation biological_process
GO:0000785 chromatin cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0005634 nucleus cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033800 True 479 lncRNA 0.42 2 19379111 19382322

Neighbor

gene id symbol gene type direction distance location
XLOC_016282 BX511079.2 coding downstream 15950 19362798 ~ 19363161 (-)
XLOC_016281 zfyve9a coding downstream 24489 19280829 ~ 19354622 (-)
XLOC_016280 BX511079.1 coding downstream 109814 19252270 ~ 19269297 (-)
XLOC_016279 cdc20 coding downstream 144642 19217586 ~ 19234469 (-)
XLOC_016278 NA coding downstream 197542 19152372 ~ 19181569 (-)
XLOC_016284 BX664750.1 coding upstream 123989 19506311 ~ 19513296 (-)
XLOC_016285 pimr52 coding upstream 136198 19518520 ~ 19520690 (-)
XLOC_016286 BX664750.5 coding upstream 141264 19523586 ~ 19523683 (-)
XLOC_016287 BX664750.2 coding upstream 157358 19539680 ~ 19559171 (-)
XLOC_016288 BX664750.3 coding upstream 177770 19560092 ~ 19565273 (-)
XLOC_016276 NA non-coding downstream 269807 19100422 ~ 19109304 (-)
XLOC_016269 BX640595.1 non-coding downstream 2434720 16944272 ~ 16944391 (-)
XLOC_016290 BX664750.7 non-coding upstream 197260 19579582 ~ 19579679 (-)

Expression


Co-expression Network