RNA id: TCONS_00033800


Basic Information

Item Value
RNA id TCONS_00033800
length 479
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_016283
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19379111 ~ 19382322 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAACAAAGACATCAAAGGTGGCCCCCTTGGAGGGCCACGCAGCttttctaagccgcatggacttttcccgccacgctttcttattttccggcaaagtaaactcagtttaaagtttgcgattgTGTTCGCTAGAACTGTTTTACAAACTCAacccatcaagaaggacatcaaaggagtttcatcaggaagagagagacctccagacatgaaagtccagatgCAGCGATGACGGTTTACACTGAAGCCACACCTAAACAATTGCAACAGCAGGGCATCCAGTATGATGTCATCACTTTTACTGAGGAGtagaaacacaacacacacattatttattgacaacatcaacacacacacagacagaagaaTATTTGAAGCTCATCTTAGTTACAAATGACCATCACAAACTGCGCTGATCATAAGTAACACAGACTTCTTCCAGAAAAATCACTCATTTATAAGGTGAATGTACAGTTAGAT

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043049 otic placode formation biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0060788 ectodermal placode formation biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0030916 otic vesicle formation biological_process
GO:0000785 chromatin cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0005634 nucleus cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032104 lncRNA downstream 109814 19252270 ~ 19269297 (-) True XLOC_016280
TCONS_00033799 lncRNA downstream 197542 19152372 ~ 19181569 (-) False XLOC_016278
TCONS_00032099 lncRNA downstream 197542 19152372 ~ 19181569 (-) True XLOC_016278
TCONS_00033798 lncRNA downstream 197558 19152372 ~ 19181553 (-) False XLOC_016278
TCONS_00033797 lncRNA downstream 273669 19100422 ~ 19105442 (-) False XLOC_016276
TCONS_00032114 lncRNA upstream 177770 19560092 ~ 19565273 (-) True XLOC_016288
TCONS_00033360 lncRNA upstream 210132 19592454 ~ 19595061 (-) True XLOC_016291
TCONS_00032118 lncRNA upstream 219374 19601696 ~ 19621644 (-) True XLOC_016292
TCONS_00033801 lncRNA upstream 742672 20124994 ~ 20148358 (-) False XLOC_016295
TCONS_00033802 lncRNA upstream 761935 20144257 ~ 20148003 (-) False XLOC_016295
TCONS_00032105 mRNA downstream 24489 19280829 ~ 19354622 (-) False XLOC_016281
TCONS_00032106 mRNA downstream 57184 19281793 ~ 19321927 (-) True XLOC_016281
TCONS_00032101 mRNA downstream 144642 19217586 ~ 19234469 (-) False XLOC_016279
TCONS_00032100 mRNA downstream 144743 19217586 ~ 19234368 (-) False XLOC_016279
TCONS_00032103 mRNA downstream 144782 19231118 ~ 19234329 (-) True XLOC_016279
TCONS_00032110 mRNA upstream 136198 19518520 ~ 19520324 (-) False XLOC_016285
TCONS_00032111 mRNA upstream 136354 19518676 ~ 19520690 (-) True XLOC_016285
TCONS_00032115 mRNA upstream 192174 19574496 ~ 19576640 (-) False XLOC_016289
TCONS_00032116 mRNA upstream 192328 19574650 ~ 19630297 (-) False XLOC_016289
TCONS_00032119 mRNA upstream 245812 19628134 ~ 19630297 (-) True XLOC_016289
TCONS_00032107 other downstream 15950 19362798 ~ 19363161 (-) True XLOC_016282
TCONS_00032102 other downstream 156678 19217738 ~ 19222433 (-) False XLOC_016279
TCONS_00032082 other downstream 1986303 17339418 ~ 17392808 (-) False XLOC_016272
TCONS_00032083 other downstream 1986392 17353831 ~ 17392719 (-) True XLOC_016272
TCONS_00032073 other downstream 2434720 16944272 ~ 16944391 (-) True XLOC_016269
TCONS_00032108 other upstream 123989 19506311 ~ 19513296 (-) False XLOC_016284
TCONS_00032109 other upstream 125778 19508100 ~ 19512644 (-) True XLOC_016284
TCONS_00032112 other upstream 141264 19523586 ~ 19523683 (-) True XLOC_016286
TCONS_00032113 other upstream 157358 19539680 ~ 19559171 (-) True XLOC_016287
TCONS_00032117 other upstream 197260 19579582 ~ 19579679 (-) True XLOC_016290

Expression Profile

//