RNA id: TCONS_00032113


Basic Information

Item Value
RNA id TCONS_00032113
length 920
RNA type processed_transcript
GC content 0.47
exon number 5
gene id XLOC_016287
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19539680 ~ 19559171 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTATCGGATGATGGTGGTGTTCTGCCGTGTTGCCGGTGGATTTGAGTGGCTCACGGGGTGGTTCGTGTGCACACTTGATACCAAACGCTTTCTTTAAACGGGAAATCAACTTTGAAAAGGCCATTTTATCACCGTTTTTTGGAATCGCAGTTCTCGTTCTGGAGGTGCCGTCTTACATGACGGTCCATGCCAAAGGAAATGTGGACGGGTACGTTCTCGAAAATCTGAAAGCAAGGCTGGAACAGTGGTTGAGGTCAAGAAGAAGGAGCAGCCTGAAGAGCAAGAAGATGACATTGTTGATGCAAGCGCTCTTGATGATCAAGGTGACAGTGATTATAACCAGCTGATGAGGAGGCCAGATCCAGACTGGCTGTCAGGCACTTCACTCCTCTTCCCTCCTGCTCTTCATCATGTCCCGTGTCTACCTCACGGAAATGTCCTCGCAGGATGGTGGGACCTCCTCGCAAATTTCTTCCAGATTCAGGTGAAAAGCCCTTCTCCTGTAAAATGTGCCACTTTACGACACGACACAGGAAGAACCTGCGACTACATGTGCAATGTCGCCACCCTGAGACTTTTCAAGAGTCGAACACATCCAGATGAGCCGATCTGACGACGACAGACGCCTGTTTTCACCCTGAAGCAGATTGAGGAGCTGAGGTTACAGCATGAAAACCAGGAATTTCAAGAGACCATTacACACTGATGATCTGAGCCTGGATCGTCAAACAGTGAGAGGCCGTTCATCACAGCATAGAAAACTATACAAATCAAGAAACATGAAAGGAAAAGTATCACCTCAAGCAACCAAGTTTTAagcaatttcatgcaaatgtcaaccctGAAAAGTTTTCtccaaaatagcgaaaccctttgtaggtttttgtgtgtgtgtaggcttgtgttttacagtgctgta

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142642

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033800 lncRNA downstream 157358 19379111 ~ 19382322 (-) True XLOC_016283
TCONS_00032104 lncRNA downstream 270383 19252270 ~ 19269297 (-) True XLOC_016280
TCONS_00033799 lncRNA downstream 358111 19152372 ~ 19181569 (-) False XLOC_016278
TCONS_00032099 lncRNA downstream 358111 19152372 ~ 19181569 (-) True XLOC_016278
TCONS_00033798 lncRNA downstream 358127 19152372 ~ 19181553 (-) False XLOC_016278
TCONS_00032114 lncRNA upstream 921 19560092 ~ 19565273 (-) True XLOC_016288
TCONS_00033360 lncRNA upstream 33283 19592454 ~ 19595061 (-) True XLOC_016291
TCONS_00032118 lncRNA upstream 42525 19601696 ~ 19621644 (-) True XLOC_016292
TCONS_00033801 lncRNA upstream 565823 20124994 ~ 20148358 (-) False XLOC_016295
TCONS_00033802 lncRNA upstream 585086 20144257 ~ 20148003 (-) False XLOC_016295
TCONS_00032111 mRNA downstream 18990 19518676 ~ 19520690 (-) True XLOC_016285
TCONS_00032110 mRNA downstream 19356 19518520 ~ 19520324 (-) False XLOC_016285
TCONS_00032105 mRNA downstream 185058 19280829 ~ 19354622 (-) False XLOC_016281
TCONS_00032106 mRNA downstream 217753 19281793 ~ 19321927 (-) True XLOC_016281
TCONS_00032103 mRNA downstream 305351 19231118 ~ 19234329 (-) True XLOC_016279
TCONS_00032115 mRNA upstream 15325 19574496 ~ 19576640 (-) False XLOC_016289
TCONS_00032116 mRNA upstream 15479 19574650 ~ 19630297 (-) False XLOC_016289
TCONS_00032119 mRNA upstream 68963 19628134 ~ 19630297 (-) True XLOC_016289
TCONS_00032122 mRNA upstream 265019 19824190 ~ 20120904 (-) False XLOC_016294
TCONS_00032121 mRNA upstream 265019 19824190 ~ 20120904 (-) False XLOC_016294
TCONS_00032112 other downstream 15997 19523586 ~ 19523683 (-) True XLOC_016286
TCONS_00032108 other downstream 26384 19506311 ~ 19513296 (-) False XLOC_016284
TCONS_00032109 other downstream 27036 19508100 ~ 19512644 (-) True XLOC_016284
TCONS_00032107 other downstream 176519 19362798 ~ 19363161 (-) True XLOC_016282
TCONS_00032102 other downstream 317247 19217738 ~ 19222433 (-) False XLOC_016279
TCONS_00032117 other upstream 20411 19579582 ~ 19579679 (-) True XLOC_016290
TCONS_00032120 other upstream 75823 19634994 ~ 19635091 (-) True XLOC_016293
TCONS_00032124 other upstream 586570 20145741 ~ 20145825 (-) False XLOC_016295
TCONS_00032136 other upstream 1140310 20699481 ~ 20701863 (-) False XLOC_016302
TCONS_00032137 other upstream 1141917 20701088 ~ 20702736 (-) False XLOC_016302

Expression Profile

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