XLOC_016295


Basic Information

Item Value
gene id XLOC_016295
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 20124994 ~ 20148369 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033801
GAAGACTAGACGGAGAGGAGCGAGCATCAGATCTCCCTCAATTAATCCACCATTAGATGCCTGAGATTCATGGCTCACTGCCTTTGCTTACTGCGTTGGAGCTCAAATCTAAttagtctctctctctttctctttctctctcggcTTTGCGTTCTCCATGTCCATCCCTCCTTAGATCGAAAGATAGACGGATCTTTCCTCGCTGAGCCCTGTGGTTGGGTATTTTAGTTTGCTGTGCGCAACAACTGGCAGAGCTCTCTGCTGTTCTCCGGCAAGCGTGGTCTTTGGCATGGGAGGGGATCCTGCACGTCGTTTGGGCACATGGTCTTACGGCAGGGACAGAAGGAACCTGGAGGAACAGAAGAGAGGCATCCTATGCCTTCCCCATCACTGCCGGCTCATGGCAGCGGACGAATGGGCGGCTTTGTGTTCAGCGGGTGCTGAGAGATCTCTAGGATTTGGCCTGCGAGCACTTCCGCCCCCAGAGGCCGGGCTGGACCGAGGACAGGGCGCGAGCTCCGTGAGCACCCTCTCTCAGCACACAAACGCTGGGTGACGACAATCAATCAAATGCTGATTCACCGAATTGGCCAACACGGAGGAGAGGGAAAATTCACCGGAGCCAAGTGTGTCATCTGTTGCCAGCGTCTGTGTGCGTGATGACAATGCTGTGCTGGATTCTGGCTCTGTATTTCTACAGCTGCTTGATTATAATGATATTCTGACCCCTGCTGATTCTAGAGGATCCACAAGCCCTCTGATCAGTAACTTGCCTCGGGCTTATCAGCTCTCAGCATGAGGAGGCTGCTGTCCCGAACATAAATATTAGATTTGAAAAAATATAGGGCGAATATATGAATCGAAgagcaagcaaataaaaaaaaacagtcagtcTGGGGCATACTTTGAGTTTTTATGATTAGTTGTGTGTTGTTGTTTGCATTAGAAGAGTTACATCAAAGATATGTATTAAACTCTTTTGTGTTCTGATAATAAGTAGAAAATATAATCATTTTTCATAATGACT
>TCONS_00033802
CTGTAACTCCCTCGCTCTTCTCATCCTCCTGTGACTTAGTTTGCTGTGCGCAACAACTGGCAGAGCTCTCTGCTGTTCTCCGGCAAGCGTGGTCTTTGGCATGGGAGGGGATCCTGCACGTCGTTTGGGCACATGGTCTTACGGCAGGGACAGAAGGAACCTGGAGGAACAGAAGAGAGGCATCCTATGCCTTCCCCATCACTGCCGGCTCATGGCAGCGGACGAATGGGCGGCTTTGTGTTCAGCGGGTGCTGAGAGATCTCTAGGGATTTGGCCTGCGAGCACTTCCGCCCCCAGAGGCCGGGCTGGACCGAGGACAGGGCGCGAGCTCCGTGAGCACCCTCTCTCAGATGCAACCTTTGACGGGGGCCTTGCCTTATGGTAAAGGGCATCTTCAATCAATTCCCCTAGAGAGAAAACTCTGTTTTGGCCTATGCCACTGTGGATGGCTGAAAGTCAGGCGAAGCCCCCCACCCCCTTTTTTTTCTGAGGCTCTCTTCGGTGACGGGTATTCTTGGGTGGATAATACGGCTCTCGTTGTTATTGCTTAAGAATACGCGTAGTTGAGGAGAGTCATTGTCGACTGTCTTCGGGGAGATAACCTCCACTGGTCCCGAAAAACCTTCTGGCTTTGCACTGTGGCCGTTTATGTAGCAACTAGACAGCTAATCACTCTTCACCGTGGTTTGTTTGATTTCTGCAACAGAAGACAGGCTGCTCTTGCTCTCTGTGTAGTGTCTCCACCTACATTGGCAAAGTGCTGCTTTATGTACTGCTGCAATTCAACAAGCAGCATTTTGCATTTCAcacaacttgtttttttatttatttatgtatttttttccccCTGTGCGCGCATGGAGAATGGCGTTTATTTGTGCTCTCTTCGGGGAGTGTTTTAGCGTACACATGCCTACTTGCCTGGCTGATAGGAATGCATTTACTGCTCTTTATTGTTAGTCCTGAGCACCAGCGGGAGCCCTGGACTGCATGGGGTGTTCACACAGATTGATTTTGAGATGGCATTACGCGTACAGTTTTCGCCATTCAGCTGACAGCAATGGGAGGCAAAATGTTCAGGGAATCTAAAGAGGCTTTGTTATGAAATGGGAGGGACTCATTCTAATTACAAAACGCAGCATAATATGAATGCGAACCAGGCTCGTAGCATCAGCTGGTTCATTCTGGACAAAAAcaaattgattattttttcttctcCTAGAtaaagacacacatacacataatgtTCTTTTTCAAACCACTAATTACTTTTTAATGATGCGCTCAAATGTCTGAGTTAGCTTGTGCTGGTGAAAGCCTATGAGGCCTGTGGCATATGAAGATGGTCAGTGTTTGTTAAAGCTGTCATATCTATCTCTAAATTCCTATCTTAAACAAATGTTGTTTGCATTTGTAGCTTTATTAAAACTGAATGCAATTTCCTGCTCaaaaatgcttgttttttgtCTATATTTAAGGTTCATGTgggttaatatttaatttacacaaAACTGTTGTAAATGCATAGCTTGCTTCTTTAATTGCTTTAAAAAGGCCTGGAAGACATAAGCAAAATGTAAATTGGCTGCTACTCTGTTTTAGTCATATTAGCCAGAGAGCTAGTGAAAATAACTAGAGGCTTATTAGGAATGCTTATGAAAAGTCCCCAGCACCAGGAAAAAAAAGGTGTAATTATGTAATCTAGTGATGTATTAGTGATATTATACATATCACAGGGTTAAAACTAATCCGTTctcaatgtattatattatattatattatattatattatattatattatattatattatattatattatattatattatattaatctaaTTTATTATTGTAACATTTTCATTTCAGTGCCATGCTATACTATGTAATGCACACTCAACTTTTCTATTTCACACAAAATTAacatttagtgattttttttttttcaaacgttGAATGTGCCTTTATCATAAAGTCATGGCAAATGTTGTTTCCGATGACAACTTGAAGTCTTAAATAAACTctctattttaaaagaaaactcctgAATATTGTTATG
>TCONS_00033803
TAAGATGTCATGAAGACTAGACGGAGAGGAGCGAGCATCAGATCTCCCTCAATTAATCCACCATTAGATGCCTGAGATTCATGGCTCACTGCCTTTGCTTACTGCGTTGGAGCTCAAATCTAAttagtctctctctctttctctttctctctcggcTTTGCGTTCTCCATGTCCATCCCTCCTTAGATCGAAAGATAGACGGATCTTTCCTCGCTGAGCCCTGTGGTTGGGTATTTTAGTTTGCTGTGCGCAACAACTGGCAGAGCTCTCTGCTGTTCTCCGGCAAGCGTGGTCTTTGGCATGGGAGGGGATCCTGCACGTCGTTTGGGCACATGGTCTTACGGCAGGGACAGAAGGAACCTGGAGGAACAGAAGAGAGGCATCCTATGCCTTCCCCATCACTGCCGGCTCATGGCAGCGGACGAATGGGCGGCTTTGTGTTCAGCGGGTGCTGAGAGATCTCTAGGATTTGGCCTGCGAGCACTTCCGCCCCCAGAGGCCGGGCTGGACCGAGGACAGGGCGCGAGCTCCGTGAGCACCCTCTCTCAGATGCAACCTTTGACGGGGGCCTTGCCTTATGGTAAAGGGCATCTTCAATCAATTCCCCTAGAGAGAAAACTCTGTTTTGGCCTATGCCACTGTGGATGGCTGAAAGTCAGGCGAAGCCCCCCACCCCCTTTTTTTTCTGAGGCTCTCTTCGGTGACGGGTATTCTTGGGTGGATAATACGGCTCTCGTTGTTATTGCTTAAGAATACGCGTAGTTGAGGAGAGTCATTGTCGACTGTCTTCGGGGAGATAACCTCCACTGGTCCCGAAAAACCTTCTGGCTTTGCACTGTGGCCGTTTATGTAGCAACTAGACAGCTAATCACTCTTCACCGTGGTTTGTTTGATTTCTGCAACAGAAGACAGGCTGCTCTTGCTCTCTGTGTAGTGTCTCCACCTACATTGGCAAAGTGCTGCTTTATGTACTGCTGCAATTCAACAAGCAGCATTTTGCATTTCAcacaacttgtttttttatttatttatgtatttttttccccCTGTGCGCGCATGGAGAATGGCGTTTATTTGTGCTCTCTTCGGGGAGTGTTTTAGCGTACACATGCCTACTTGCCTGGCTGATAGGAATGCATTTACTGCTCTTTATTGTTAGTCCTGAGCACCAGCGGGAGCCCTGGACTGCATGGGGTGTTCACACAGATTGATTTTGAGATGGCATTACGCGTACAGTTTTCGCCATTCAGCTGACAGCAATGGGAGGCAAAATGTTCAGGGAATCTAAAGAGGCTTTGTTATGAAATGGGAGGGACTCATTCTAATTACAAAACGCAGCATAATATGAATGCGAACCAGGCTCGTAGCATCAGCTGGTTCATTCTGGACAAAAAcaaattgattattttttcttctcCTAGAtaaagacacacatacacataatgtTCTTTTTCAAACCACTAATTACTTTTTAATGATGCGCTCAAATGTCTGAGTTAGCTTGTGCTGGTGAAAGCCTATGAGGCCTGTGGCATATGAAGATGGTCAGTGTTTGTTAAAGCTGTCATATCTATCTCTAAATTCCTATCTTAAACAAATGTTGTTTGCATTTGTAGCTTTATTAAAACTGAATGCAATTTCCTGCTCaaaaatgcttgttttttgtCTATATTTAAGGTTCATGTgggttaatatttaatttacacaaAACTGTTGTAAATGCATAGCTTGCTTCTTTAATTGCTTTAAAAAGGCCTGGAAGACATAAGCAAAATGTAAATTGGCTGCTACTCTGTTTTAGTCATATTAGCCAGAGAGCTAGTGAAAATAACTAGAGGCTTATTAGGAATGCTTATGAAAAGTCCCCAGCACCAGGAAAAAAAAGGTGTAATTATGTAATCTAGTGATGTATTAGTGATATTATACATATCACAGGGTTAAAACTAATCCGTTctcaatgtattatattatattatattatattatattatattatattatattatattatattatattatattatattatattaatctaaTTTATTATTGTAACATTTTCATTTCAGTGCCATGCTATACTATGTAATGCACACTCAACTTTTCTATTTCACACAAAATTAacatttagtgattttttttttttcaaacgttGAATGTGCCTTTATCATAAAGTCATGGCAAATGTTGTTTCCGATGACAACTTGAAGTCTTAAATAAACTctctattttaaaagaaaactcctgAATATTGTTATG
>TCONS_00032124
GGCTCTCTTCGGTGACGGGTATTCTTGGGTGGATAATACGGCTCTCGTTGTTATTGCTTAAGAATACGCGTAGTTGAGGAGAGTC
>TCONS_00032125
CTCTCCCACTCCTGCTTTCCCTCCCACTCTCTCTGTAACTCCCTCGCTCTTCTCATCCTCCTGTGACTTAGTTTGCTGTGCGCAACAACTGGCAGAGCTCTCTGCTGTTCTCCGGCAAGCGTGGTCTTTGGCATGGGAGGGGATCCTGCACGTCGTTTGGGCACATGGTCTTACGGCAGGGACAGAAGGAACCTGGAGGAACAGAAGAGAGGCATCCTATGCCTTCCCCATCACTGCCGGCTCATGGCAGCGGACGAATGGGCGGCTTTGTGTTCAGCGGGTGCTGAGAGATCTCTAGGATTTGGCCTGCGAGCACTTCCGCCCCCAGAGGCCGGGCTGGACCG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0061572 actin filament bundle organization biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0030424 axon cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0044295 axonal growth cone cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0150034 distal axon cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000082222 ENSDARG00000101927

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033801 False 1027 lncRNA 0.48 4 20124994 20148358
TCONS_00033802 False 2059 lncRNA 0.41 3 20144257 20148003
TCONS_00033803 False 2258 lncRNA 0.41 4 20144257 20148369
TCONS_00032124 False 85 miRNA 0.48 1 20145741 20145825
TCONS_00032125 True 344 lncRNA 0.59 2 20146139 20148035

Neighbor

gene id symbol gene type direction distance location
XLOC_016294 dpydb coding downstream 4090 19824190 ~ 20120904 (-)
XLOC_016293 BX088713.2 coding downstream 489903 19634994 ~ 19635091 (-)
XLOC_016289 pimr51 coding downstream 494697 19574496 ~ 19630297 (-)
XLOC_016296 plppr5a coding upstream 114110 20262479 ~ 20323901 (-)
XLOC_016297 frrs1a coding upstream 296108 20444477 ~ 20470140 (-)
XLOC_016298 NA coding upstream 305245 20453614 ~ 20462923 (-)
XLOC_016299 NA coding upstream 309578 20457947 ~ 20459009 (-)
XLOC_016300 si:ch211-267e7.3 coding upstream 407025 20555394 ~ 20599315 (-)
XLOC_016292 BX088713.1 non-coding downstream 503350 19601696 ~ 19621644 (-)
XLOC_016291 NA non-coding downstream 529933 19592454 ~ 19595061 (-)
XLOC_016290 BX664750.7 non-coding downstream 545315 19579582 ~ 19579679 (-)
XLOC_016288 BX664750.3 non-coding downstream 559721 19560092 ~ 19565273 (-)
XLOC_016302 AL954134.1 non-coding upstream 551112 20699481 ~ 20704523 (-)
XLOC_016303 FO681336.1 non-coding upstream 609213 20757582 ~ 20757699 (-)
XLOC_016311 NA non-coding upstream 973819 21122188 ~ 21124115 (-)

Expression


Co-expression Network