Fish Transcriptome and Expression Database

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model fish

XLOC_016303 (FO681336.1)

Basic Information

Item	Value
gene id	XLOC_016303
gene name	FO681336.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007113.7
NCBI id	CM002886.2
chromosome length	59640629
location	20757582 ~ 20757699 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032140
TGCcgcagccatatcaccctgcagcccaagactagTTACTCACTTGAAGCTAAGCAGGggtgagcctggtcagtacctagatgggagaccacatgggaaaactaggttgcagttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000080487

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00032140	True	118	rRNA	0.53	1	20757582	20757699

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_016301	dusp12	coding	downstream	42488	20658259 ~ 20715094 (-)
XLOC_016302	AL954134.1	coding	downstream	53059	20699481 ~ 20704523 (-)
XLOC_016300	si:ch211-267e7.3	coding	downstream	158267	20555394 ~ 20599315 (-)
XLOC_016297	frrs1a	coding	downstream	287442	20444477 ~ 20470140 (-)
XLOC_016298	NA	coding	downstream	294659	20453614 ~ 20462923 (-)
XLOC_016304	CABZ01020455.1	coding	upstream	5590	20763289 ~ 20788698 (-)
XLOC_016305	tpra	coding	upstream	53978	20811677 ~ 20866758 (-)
XLOC_016306	pdca	coding	upstream	125255	20882954 ~ 20890429 (-)
XLOC_016307	ptgs2a	coding	upstream	158798	20916497 ~ 20923864 (-)
XLOC_016308	lyrm4	coding	upstream	222463	20980162 ~ 20981907 (-)
XLOC_016299	NA	non-coding	downstream	298573	20457947 ~ 20459009 (-)
XLOC_016295	NA	non-coding	downstream	609213	20124994 ~ 20148369 (-)
XLOC_016293	BX088713.2	non-coding	downstream	1122491	19634994 ~ 19635091 (-)
XLOC_016311	NA	non-coding	upstream	364489	21122188 ~ 21124115 (-)
XLOC_016313	NA	non-coding	upstream	437829	21195528 ~ 21208559 (-)
XLOC_016314	CU464125.1	non-coding	upstream	555043	21312742 ~ 21320684 (-)
XLOC_016316	NA	non-coding	upstream	623626	21381325 ~ 21383394 (-)
XLOC_016318	NA	non-coding	upstream	783907	21541606 ~ 21542043 (-)

Expression

Co-expression Network