XLOC_016311


Basic Information

Item Value
gene id XLOC_016311
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 21122188 ~ 21124115 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033804
GTAATCATACTGCGACATTCAAGGCTCATGCGGAAACACAACCAGAACCCGAATGAGAACGGTTTAGCATGAGAGTGGAAATGTGGCTTATGcaaatttttttacttattttttccaATATTAGAATGAAAAATCAGAACAAGCTCAAACATCCACTCATAGACCATTCAATATCAGAAATGAGGTCGAAAGTGTACAAAAGAGATGGATTGAAATGCTTGTGAACCGATAAACAAAAATCCATCTTCATACCAGGAGTAAACAGACTCTGAGCTCAGCAGTCCCATCTTAATTCAGTCTCTTACTTGTTGAAGAGGTGGTTGTCCACCTTAATCTTCGAGTTGGCTTTGAAGTCATCAGGCATCAGCATAACAGGAATCTGGATGTGTCTGAGTTCATTTATCTAAAGGAAAAGAACAGTAGCtgttaaaataatacaaactGAGTCACTCATATCTGCATAATTAAATAACATATAATACAATATCAAACGAGCTGAGACATTTAAACAATATCTTGACATTTGCTGTACAAGAGACTTCTGGAAGCGCTCCAATAGAATAAATCCCAGCTTTTTCTTATTCACCGAGACCTATCTGCAGTACAGGGGCCATTTCTCAAAATCTACTGCACTGATGGACCGCGGCCAAGAAACAACTTCCTTTCACTAACAACAGCAGCAGTGAAAAACAGAGCTGTCTGCGCCAACAGGAGAGTTATTTTGAGCATCTTCCTGTGCCTCCATCTGTCCCTGCTCCATCGGAGGTGTCTTCCTGTCTATTAACAAGCACTTTTATGAAGAAAGATGCACTTTGTGGAGTAAAATGATGACAAACGTGATGTTAAGAATAAGCATTAGGCAAAAATGCTGATTTAAGGAACTGTTAACATATCTGTGTGAAGCCCCGGAATGTAAGGTGTGAACCTTCACTATTTAATGCTCCATTATAATGGTACAACAGAGATTTAAAACTGAGCTGAAGAGATAAAGGAGGAGTGGAAGAAAAGCAAATGAAGGACCGGGGAAGAGGGCATGAGGTTCATGGAAAGCTGCAATTGAAACAGCAGTGGCTGAAATGGGAAAGGACAAGCCACGGTCAACCAGACTGAGCTgtgtgacacaaacacacacgcacaccaccATCCATTCATTTACACAGCATGTGACAGGTGATTCAGGGCAATAAACAAATTTTGGCCCTAAAGCATGTTTAGGAGCCATATTTTATAGTTTACTGTTCAAGGTTATTATCAAAATTTTTGGTGTTATATAATGTGTTCCTGTATATTTGTATGTCATATACTTTTGGTTTTCTACTGAGCATGTGTAATATGCTGTTTTAGTATGCTgttttgtgcatgtgcatgtaCGTGAGTTTTTTTGCACATGTGAGTGTGATGTGCAGGTGTTGGAGAGCACAAGATTTTGATGTAAAAGTGTCAAATTGGCATCAGAATTCATCAAACTGGAACAAACAAGTTGTATATGAGTGATAAAATTGACAGTGTGGATGACTGGTGTAAAAAGATACACTGAATTAAATGGACTATCGTGTTGTGATCAAGTGAAAGAGCACTAATACATGTCAAAATGTGTAAAATGATCATAAGAAGGATACATGGCTGATGGCTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033804 True 1633 lncRNA 0.39 2 21122188 21124115

Neighbor

gene id symbol gene type direction distance location
XLOC_016310 nebl coding downstream 39493 21076585 ~ 21082695 (-)
XLOC_016309 nrn1b coding downstream 128062 20991985 ~ 20994126 (-)
XLOC_016308 lyrm4 coding downstream 140281 20980162 ~ 20981907 (-)
XLOC_016307 ptgs2a coding downstream 198324 20916497 ~ 20923864 (-)
XLOC_016306 pdca coding downstream 231759 20882954 ~ 20890429 (-)
XLOC_016312 bmi1b coding upstream 40815 21164930 ~ 21170517 (-)
XLOC_016313 NA coding upstream 71413 21195528 ~ 21208559 (-)
XLOC_016314 CU464125.1 coding upstream 188627 21312742 ~ 21320684 (-)
XLOC_016315 klhl40a coding upstream 202842 21326957 ~ 21352101 (-)
XLOC_016316 NA coding upstream 257210 21381325 ~ 21383394 (-)
XLOC_016303 FO681336.1 non-coding downstream 364489 20757582 ~ 20757699 (-)
XLOC_016302 AL954134.1 non-coding downstream 417665 20699481 ~ 20704523 (-)
XLOC_016298 NA non-coding downstream 659265 20453614 ~ 20462923 (-)
XLOC_016299 NA non-coding downstream 663179 20457947 ~ 20459009 (-)
XLOC_016295 NA non-coding downstream 973819 20124994 ~ 20148369 (-)
XLOC_016318 NA non-coding upstream 417491 21541606 ~ 21542043 (-)
XLOC_016319 NA non-coding upstream 447021 21571136 ~ 21593060 (-)

Expression


Co-expression Network