XLOC_016316


Basic Information

Item Value
gene id XLOC_016316
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 21381325 ~ 21383394 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033807
ctgttttttaaaaaggtgctttAATAGAACATGTCAGAGTCCGGAAGAAAACTTGCGACATCCATGAATCAATTCATCTTGAAATCTAGTCCAAACACAAGCATACACTTTGAATACTGACAGAAGACCACAGGCGTGAGAACGAACGGCTCTCCGTCGCCTGCCGCACAACAGCATGAAGAGAAATGGACAGAGGTAGACGACGAAAAAGACGGAGGAGACAAATAAAGTAGTGACCGAACTGACGTGGCGGACTCTGGGTAGAGGAGAAGAGGGTTATTGCCTGTTTGCCAGCGGATCCACCTCCGCCGCTCCTCTCGGTTTATTAGGCACTGCGGTGATGGAGAGCCTGCGCAGCCTGAGCCCAACGCTTTCAAAACGGCAACACTTCAGGAGGGCCTTGTAAGGCTCAGTCGGGGCTTGGGCACAGGCTGCCCAGCGCTCGTCCCTGGGCTGGTACTGGTTGTACCTACAGggaggtttctgtagtgtagtttACAGTGGTAGCAGCAGCAGGGTATGGTTTATGAACgattttaaaatatggaccaaatcTCAACGACTCaaacaaaagaattaaaaacaaaaagggaTACATTTGCAATTGCGCATCTGCAAAGTACACTTCCCCTTAAAATACAACAGCTGCAGTGTCTACACTACTTATCCAAGGCATTCGGATCAAGAAAAACTAGTTTTTGGGCTCAattttcaggtttgtttgaaatgtCCAATTTGTCTCAAGCACCAGAATTAGCGTCGGCCCTGTTTGCTGAAACGGTTTATATTTGCGATTGGCACATATCATTTTGGGTTTAAGATCGGTTAGTTGGCAAAAAGAGGCCAAGGTTTGTGAGACGAGCAACCTAACAAGTGCAAATGCATTCCTttgctcttaaaaaaaaacaacaaactaaaacatATACAAGTCTAGATAATAATATCAGTCTATATAATGGCACAAGCTAAAGCAAACTTGAAAAATAAAAGGagcacaagaagaagaagaaagatgGAGACGTGTATCCAGCTTTACATAAAAATCTCTGGCCTCTTTATAACAGTGCTTTTCGAAAAAGAGACCGACCTGCCTCCGTTTTTAAAGCATATATTTCTTGTAAAGATTAGGTTTCTCTGGAAATATGTCGTGTACAAAATGTTAATTTCCCCCATAAAAATGACATTCAAAAAAGGCACTTTGTTGGGTCGGAGAGGAAACCCCACAGTCCTTTAACTCTACAGATTTCTACCTGCATAGCAACACCTCAGAGAATGGTTATGACTTGAATATTGtcaaaaaagggaaagaaaaagttgatttgttgttgttgttttttggtttATCATAAGCACTTTTCAAAAGAGCAGTATTTTGAGTGTCTGTTATGTCAAGAGTCCTGGTGTGCGTGTCCTGCTGCA

Function

GO:

id name namespace
GO:0006335 DNA replication-dependent nucleosome assembly biological_process
GO:0034723 DNA replication-dependent nucleosome organization biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033807 True 1419 lncRNA 0.42 2 21381325 21383394

Neighbor

gene id symbol gene type direction distance location
XLOC_016315 klhl40a coding downstream 29224 21326957 ~ 21352101 (-)
XLOC_016314 CU464125.1 coding downstream 60641 21312742 ~ 21320684 (-)
XLOC_016313 NA coding downstream 172766 21195528 ~ 21208559 (-)
XLOC_016312 bmi1b coding downstream 210808 21164930 ~ 21170517 (-)
XLOC_016311 NA coding downstream 257210 21122188 ~ 21124115 (-)
XLOC_016317 plcd1b coding upstream 4508 21387902 ~ 21438492 (-)
XLOC_016318 NA coding upstream 158212 21541606 ~ 21542043 (-)
XLOC_016319 NA coding upstream 187742 21571136 ~ 21593060 (-)
XLOC_016320 ralab coding upstream 224958 21608352 ~ 21618629 (-)
XLOC_016321 C2H7orf25 coding upstream 236783 21620177 ~ 21625493 (-)
XLOC_016303 FO681336.1 non-coding downstream 623626 20757582 ~ 20757699 (-)
XLOC_016302 AL954134.1 non-coding downstream 676802 20699481 ~ 20704523 (-)
XLOC_016326 NA non-coding upstream 881988 22265382 ~ 22268977 (-)
XLOC_016327 NA non-coding upstream 930357 22313751 ~ 22315063 (-)
XLOC_016328 NA non-coding upstream 957460 22340854 ~ 22348284 (-)

Expression


Co-expression Network