XLOC_016320 (ralab)


Basic Information

Item Value
gene id XLOC_016320
gene name ralab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 21608352 ~ 21618629 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032158
CTGGTAAAGATGACTAAAAGCAGATGCTAGATTGTGTCTACAGTAAACCCCGTCCAGTAACGTTATATGTATGGAGTCattgtaataatttaaaaagttgcaAGACAACACTAAAACGGTTTTGTATCTTAGAAAGTAACGCAAGTCTGAGACGTAACCCATCGAGTTTCGTGGCGTTGACTAGTTTAGATATTCGCATACATTAACAACATTTCTTTCCGTTCAGAAGTAAATTCTTAGTCCGAGTGAGGAAGACCAAGCCCAGTCAGCCGAGGCTGTCAGCAGTGCTGCTCCCTTCTCTGAGTCATCATGCACTGAGCAAAACAAATCTGCCGTAGCAGCAAAGCTAACAACACCTTCAACACACCAGTGCCTGTTTATTTGGGCTCACCTAATACCCATCTACCTCTGACCTTACTTCAATACACTGCCATTGTCTCGCTGCTTGAAGCCATGGCTGCCAACAGGAACGCTTTGGCTCTTCACAAAGTGATAATGGTGGGAAGTGGCGGTGTGGGCAAGTCCGCCTTAACTCTGCAGTTTATGTATGACGAGTTTGTGGAGGACTACGAGCCCACTAAAGCTGACAGCTACAGAAAAAAGGTGGTTCTGGATGGAGAGGAGGTGCAAATTGACATCCTGGACACGGCGGGACAGGAGGACTATGCTGCAATTCGGGACAACTACTTCCGCAGCGGGGAGGGATTTCTCTGCGTGTTCTCCATCACAGAATCTGAATCCTTCGCTGCTACAGCAGATTTCAGAGAACAGATACTTCGGGTTAAAGAAGAGGAGAATGTACCTTTCCTTCTGGTGGGAAATAAATCAGACTTGGAGGACCGAAGACAAGTTGGTTTGGAGGAGGCCAAGGCCAGAGCGGAGCAGTGGGGAGTCAGCTACGTAGAGACTTCTGCCAAAACCCGTGCCAACGTAGATAAGGTGTTTTTTGATCTCATGCGTGAGATCAGAGCCAGAAAAATGGAAGACGGCaaagagaaaaatggaaaaaagaagaggaaaaGTTTGGCAACGAGGATTCGAGAAAGATGTTGCATTTTATAATGACTGGATCATGCAATATCGCTGACATCTCTACCCTTTCACTGCTTCCAAAAAACCCATCAGGTTTCATCCCTCTTCAGACAAATGCTGAAGATCATCTCCTACAAACACATCTCTCCATTTCCTCCGGTTGTTTTTCTCAATGGGTATAAAAGGGCAAAACTTCAGATatgcattaaataacaaataatgtcaAAGGTCTGACATATCAGATACAACATTTCATTTCCCAACTCTCTGTAATAGACTGTTAGATTGTGTTCACTCTTTAGTTGCTTTTAGTTAAATGTGCTAAACTTTAACACTGTAAGAACAAAATACTACTCCAAGCTGTTTGCTTTTGAGTTCATGGTGTGTTGACATTTAACCTCCTGTTGTTAAACTAACTAAAGTAAAGCCTAAATAAGATTAATCTAAAATTTAAAGGTAAACTGCACAGATGCATTTAGGATATCGtttaaaagtatacatttctTCCAAAAATGGGCACTGAAGCAAATgcacaaattattaaatgaattactAAATATTGATCTTAATTTATCACTTTACCAtttttaacactaaaaatgatAACTCATTCCTTCAGCaatgctaaatattttatatatttccaaGTTTGTCCTTTTACCAAAACCTTTCCAACATGCTTAGCTATAACATCCTGTTCATTTCAGAGAAGCTGGCACTTTTATTTCAGTTGAATAATTGTAGTGTAACAGTATATAAAACCTGTTTTAAATGTGATATATTATGACCCAATCTCTCCTTGAATACACATACATTAACTATTTGTAGTCAAAGGGCTTATTCACTTCTATTTGTGTGTGGCAGCAGATTTGGAGTTTTGGTTTTGTGCTATCTAGGGGTCCCAAATAACACATGAATATTTCTAAAAAGCGTCATCTTGCTTGAGTCAAATGTACTGTGAAAAACAGGTTGGAATGTTTTATTACACAGACTGAATTGTGTACTTTATTATAACTTATTGAAATTTTATTGTAACTTATCCAGTGTAATTAGATTTTCTATTGTACATTTTAGTTCATTTAGGGTGAATGAGGAAATAAATACTCTAAAAGGGCTGGAAAGGATCTGTGTTTCAAACTGCAGGTCTTTGCGGCTACTCTGTGGATATGAGAATACTCACCCTTTTATGAATGGTTTTGAATAAGCACATCCATGTGGAAGTAACTGTTGAGCTTGACAGTTTATTGCCATATTATTCTGGCATCTACCAAACAATTTCTCTTTCATTTTGCAGCTAAAATGTTTAACTCTGctgtttttaatccaaatatatGTTACCTGTGAAATATGCAAGATTTTCCTCTTATTTTATCACTAACAGTCAGTTATCATCCCTAAAAAGCTGTATTTGTGTGGTAAGCTAAGCGTGGGGCAATGATGCTGAAATATCAACAGCTGATGCCTCATTACTCTTGACTGACTTTGAGTGCTAAAAAAGCAAGTCATTTTTATATAAACCTCTTTCTTGTACACTTAGTCTAAATGTCTTCATTTTAATCTGTATTTGGAACGCCTCTTGGCAAACGCTGAGTTTTCAGATGTTCGAAAGGTGTAAAGCCAAATTATAGAAGGATGTTCAAAATATCGAGGAGGCAACAAATGCTGGGGCCACTGATGTGATGTAATGTATTATTACAACAGATAGTGTGGTGATACAAGTGTCCAGTGAAAGATGCAAACTGAACTTCAGTGTAAAATGTTGTTTCTGTTACATTAATAAAATCTATTTTTGTAGACCTCTAA
>TCONS_00032159
GTGCTTTCTTGTTCTAGGGCTCACCTAATACCCATCTACCTCTGACCTTACTTCAATACACTGCCATTGTCTCGCTGCTTGAAGCCATGGCTGCCAACAGGAACGCTTTGGCTCTTCACAAAGTGATAATGGTGGGAAGTGGCGGTGTGGGCAAGTCCGCCTTAACTCTGCAGTTTATGTATGACGAGTTTGTGGAGGACTACGAGCCCACTAAAGCTGACAGCTACAGAAAAAAGGTGGTTCTGGATGGAGAGGAGGTGCAAATTGACATCCTGGACACGGCGGGACAGGAGGACTATGCTGCAATTCGGGACAACTACTTCCGCAGCGGGGAGGGATTTCTCTGCGTGTTCTCCATCACAGAATCTGAATCCTTCGCTGCTACAGCAGATTTCAGGTTGAGATGACACTGAAATATTGATCAATTCTTGTGTTATTGAATGTTCATGCTGTAAATGCATTCTTATTTATTACTACATTTTAGAGAACAGATACTTCGGGTTAAAGAAGAGGAGAATGTACCTTTCCTTCTGGTGGGAAATAAATCAGACTTGGAGGACCGAAGACAAGTTGGTTTGGAGGAGGCCAAGGCCAGAGCGGAGCAGTGGGGAGTCAGCTACGTAGAGACTTCTGCCAAAACCCGTGCCAACGTAGATAAGGTGTTTTTTGATCTCATGCGTGAGATCAGAGCCAGAAAAATGGAAGACGGCaaagagaaaaatggaa
>TCONS_00033810
GTGCTTTCTTGTTCTAGGGCTCACCTAATACCCATCTACCTCTGACCTTACTTCAATACACTGCCATTGTCTCGCTGCTTGAAGCCATGGCTGCCAACAGGAACGCTTTGGCTCTTCACAAAGTGATAATGGTGGGAAGTGGCGGTGTGGGCAAGTCCGCCTTAACTCTGCAGTTTATGTATGACGAGTTTGTGGAGGACTACGAGCCCACTAAAGCTGACAGCTACAGAAAAAAGGTGGTTCTGGATGGAGAGGAGGTGCAAATTGACATCCTGGACACGGCGGGACAGGAGGACTATGCTGCAATTCGGGACAACTACTTCCGCAGCGGGGAGGGATTTCTCTGCGTGTTCTCCATCACAGAATCTGAATCCTTCGCTGCTACAGCAGATTTCAGGTTGAGATGACACTGAAATATTGATCAATTCTTGTGTTATTGAATGTTCATGCTGTAAATGCATTCTTATTTATTACTACATTTTAGAGAACAGATACTTCGGGTTAAAGAAGAGGAGAATGTACCTTTCCTTCTGGTGGGAAATAAATCAGACTTGGAGGACCGAAGACAAGTTGGTTTGGAGGAGGCCAAGGCCAGAGCGGAGCAGTGGGGAGTCAGCTACGTAGAGACTTCTGCCAAAACCCGTGCCAACGTAGATAAG

Function

symbol description
ralab Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction and regulation of exocytosis. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human RALA (RAS like proto-oncogene A).

GO:

id name namespace
GO:0007265 Ras protein signal transduction biological_process
GO:0017157 regulation of exocytosis biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-195 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction and regulation of exocytosis. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human RALA (RAS like proto-oncogene A).

Ensembl:

ensembl_id ENSDARG00000016253

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032158 False 2835 mRNA 0.38 5 21608352 21618629
TCONS_00032159 False 726 lncRNA 0.47 3 21610181 21613052
TCONS_00033810 True 659 lncRNA 0.47 2 21612320 21613052

Neighbor

gene id symbol gene type direction distance location
XLOC_016319 NA coding downstream 15292 21571136 ~ 21593060 (-)
XLOC_016318 NA coding downstream 66309 21541606 ~ 21542043 (-)
XLOC_016317 plcd1b coding downstream 169860 21387902 ~ 21438492 (-)
XLOC_016316 NA coding downstream 224958 21381325 ~ 21383394 (-)
XLOC_016315 klhl40a coding downstream 256251 21326957 ~ 21352101 (-)
XLOC_016321 C2H7orf25 coding upstream 1548 21620177 ~ 21625493 (-)
XLOC_016322 chd7 coding upstream 147041 21765670 ~ 21820697 (-)
XLOC_016323 rab2a coding upstream 203054 21821683 ~ 21847935 (-)
XLOC_016324 cyp7a1 coding upstream 531505 22150134 ~ 22152797 (-)
XLOC_016325 fam110b coding upstream 589775 22208404 ~ 22292414 (-)
XLOC_016314 CU464125.1 non-coding downstream 287668 21312742 ~ 21320684 (-)
XLOC_016313 NA non-coding downstream 399793 21195528 ~ 21208559 (-)
XLOC_016326 NA non-coding upstream 646753 22265382 ~ 22268977 (-)
XLOC_016327 NA non-coding upstream 695122 22313751 ~ 22315063 (-)
XLOC_016328 NA non-coding upstream 722225 22340854 ~ 22348284 (-)
XLOC_016330 NA non-coding upstream 771161 22389790 ~ 22409189 (-)
XLOC_016331 BX927330.1 non-coding upstream 815801 22434430 ~ 22434546 (-)

Expression


Co-expression Network