XLOC_016325 (fam110b)


Basic Information

Item Value
gene id XLOC_016325
gene name fam110b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22208404 ~ 22292414 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032169
TCATCCAGGTGTCACCCCTACTGATAACCTGCAGCAGCTGGAGGACAAGGGCAGCTCGGACAGCAGCTCAGAGCCTGTCAAAACCTGAACCACAAACAGATCCTCAGCTTTGGCCAGGAACAAAGGAGCAGCGACGACGCTTTTCCCCACAATCCTCTGGTGCTCCCTCCCAGCTGGCGGGGCCTGACTGTGTCTACTGACACTGACTGGAGCTGAGTGCTCTCTTTTTCCGCCGTGCGGGGCCTGGCTGCGTGGAGGAAGTGGGGGCTAATTAATGAACTGTGAGTATGAGGCCTCACTGCTGACAGCCAGTGGAGACAGGATTAATAGTCCGGTCATCTGGCTTGATGTGTGTGCCTCCAGGCTGCCCCTTGACGAGAGTCCACTGCGGAATCCACCACGGCGGCCGCCGAGAGACCAGCAGAGATGCCCACCGAGACGCTGCAGGCAGATAGCAAGCCCGTTGGCCAGGGCGGGGCCTTTGCCTCCGCCGTCCCGCTCCGCATCCTCAACAAGGGGCCTGACTACTTCCGTCGCCAGACTGAGCCCAATCCAAAGCGCTTGAGCGCTGTGGAACGGCTCGAAGCTGACAAGGCCAAGTACGTGAAGAGCCAGGAGGTCATCAATGCTAAGCAGGAACCCATCAAGCCACAGGTCCTGGCCAAGCCCCCTGTCTGCCCAGTTCCCCTCAAGAGGGGTGGCGGTGTGGGATCTGGCTTGAAAGCCTCCAACAACAACGCCAAGTCAGACACTTGCGCAACCACCACCAAACGGGAAAATCTCAACCTGGAGATCCTGAAAAACATCCTTAACAGCTCTTCCTCTTCTGAGGGGCCCGCCAAGGGGACTTCACACAAAGTTGGGGCACGTAGCTGGGCACCTCACCACTCGTCCGAGTTATCGGAACCTGGATGTCGCTCTTTTACTGACTCTCTCAAAGTACCACCTTCTACGCAAGGCAGACACAGTCCCCAAGGAGGAAACTTGAATCTGAGTCGCAGGCTGCTGGAGGAGAGGTCATGCGAGGTTGATGGAGAACGCTCGCCCCTGCATGCTTCCCACAGCTCCTCAGACATTCGACGAATGTGCAATGGCAAGCCACTGAGAGCGGCACGTAGCAGCAGCTCTTCCGCACCACCACTGCCACCCAAGCCTAGCGCCAAGGCCTTGGCTGCTTGTGACAATGCTCCCTGCTCTCCTGAACGAGAGACACTGACTAGCACTGCTGCAGAGCTGGAGCTGGGGAGCTCTGTGGCCCGCAGGCCCTCCCTACACCGCTCTAAGTCAGACCTGAGTGACCGGTATGCTCGGGCCGGTGCTGACGTGGAGCGCTTCTTCAACTATTGTGGGCTGGATCCCGAGGAGCTGGAGAGTGTAGGTGTGGAAAGCTTTGCTAGGGCAAACTCTGACATTGTGTCGCTTAACTTCCGTAGTGCCAGCATGATCAGCTCCGACTGTGAGCAGTCACGGCATAGCAATGACGACCTGACCGATGAAGAAGATGACGCTGGGGAGCGTGTTCCCTATGGAATTTCTGCTGTTGAACGTAACGCCCGGATCATTAAGTGGCTCTACAGCATTAAACAGGCACGAGAGTCTCAGAAAGTCTCCCATGTCTAAAAGAAAGAGCAGACCTCCCCAATCCAATCTGAACTTGGTACTTGCTTATTTTTGCAATTCATGCACTGTCTTTAAATCTTGAAAGATTACATGGCAAAGCCTTTTGAGTTACCAGCTCTTTTTGAGTCGCTTTTGCATTCAGTGTTCTCTGTCTTCTGAATCTGCATGACTCCTTAGAAACTCAGCCTCTTTGCGGCCTCAAGGTAATGCAGCTCATGTAGAAGCCTCTGTAAAAATGGTTGCGTCCACGCAATCTTTATGCAGAGAACAATTCGTGTTTCcccattttatttagttttgcctCTGTCGGTCAAATGTTTTGATGCCAGCACCTTTCAGGTGCTTCTTATTTCACTTGGGCACACTGAGCCAGGAAGCCATATCTGTATGAATGCAGAGCTGCAGTGTGTTTAAATCTCTTTTGATCCTCTCTTTATCCGTTACTTTCTTTTTTGACTTGTTCTCATGATGGATACAAGCTCAATGTATATAAACCTCTGTGAATAGGCGCAGCAGAAGCATGTTTTAGTCTATTCTTCAGATCTCCCCCACCGACTTCTCTCAGTCAGCCTTGCACTGGTCATGTTGTTCTGGCAGTGTCATGACACCATCCAGCTTCATGTGGTTTGTTTTCACCTGTCTGTCATCCATGAAGTTCCTGTTTGGCGATTGATCATTTTTGTGGTCCTATTGTTTGGAAAGGTGTAAATGCTGTAAGAATATGTATATAATTTTCAGAGTTGTCAGAAAATCATTGTGTGAtgatgagtctcctgttttcctCCATAGCTCCTGGTCTGTCTGTCCCTGCTCTTGCATCGTGAGGCTGTGTGAGACTTTGTCCATGAGCAAATCTGTATGACACTGTTGTTGCAATGACATATATGTTCGGTATATTGAAGTTTGAGCTGTTACTTAAAAATTTCATCAAGACGTTTTGTTCATGTTTAGTTCTTTTTCATTTCAATAAATGGCTGATTTTGCCAACTTTTGCCATCAA
>TCONS_00032170
AAGCTTTTCAGCTCCAGTCGACAGCGTACGAGCACGGAAATATACTGCAGCATCTTCATTCATTTGAAGTGTTTGGGCGCAGTTCATAAAGGTGTCACCCCTACTGATAACCTGCAGCAGCTGGAGGACAAGGGCAGCTCGGACAGCAGCTCAGAGCCTGTCAAAACCTGAACCACAAACAGATCCTCAGCTTTGGCCAGGAACAAAGGAGCAGCGACGACGCTTTTCCCCACAATCCTCTGGTGCTCCCTCCCAGCTGGCGGGGCCTGACTGTGTCTACTGACACTGACTGGAGCTGAGTGCTCTCTTTTTCCGCCGTGCGGGGCCTGGCTGCGTGGAGGAAGTGGGGGCTAATTAATGAACTGTGAGTATGAGGCCTCACTGCTGACAGCCAGTGGAGACAGGATTAATAGTCCGGTCATCTGGCTTGATGTGTGTGCCTCCAGGCTGCCCCTTGACGAGAGTCCACTGCGGAATCCACCACGGCGGCCGCCGAGAGACCAGCAGAGATGCCCACCGAGACGCTGCAGGCAGATAGCAAGCCCGTTGGCCAGGGCGGGGCCTTTGCCTCCGCCGTCCCGCTCCGCATCCTCAACAAGGGGCCTGACTACTTCCGTCGCCAGACTGAGCCCAATCCAAAGCGCTTGAGCGCTGTGGAACGGCTCGAAGCTGACAAGGCCAAGTACGTGAAGAGCCAGGAGGTCATCAATGCTAAGCAGGAACCCATCAAGCCACAGGTCCTGGCCAAGCCCCCTGTCTGCCCAGTTCCCCTCAAGAGGGGTGGCGGTGTGGGATCTGGCTTGAAAGCCTCCAACAACAACGCCAAGTCAGACACTTGCGCAACCACCACCAAACGGGAAAATCTCAACCTGGAGATCCTGAAAAACATCCTTAACAGCTCTTCCTCTTCTGAGGGGCCCGCCAAGGGGACTTCACACAAAGTTGGGGCACGTAGCTGGGCACCTCACCACTCGTCCGAGTTATCGGAACCTGGATGTCGCTCTTTTACTGACTCTCTCAAAGTACCACCTTCTACGCAAGGCAGACACAGTCCCCAAGGAGGAAACTTGAATCTGAGTCGCAGGCTGCTGGAGGAGAGGTCATGCGAGGTTGATGGAGAACGCTCGCCCCTGCATGCTTCCCACAGCTCCTCAGACATTCGACGAATGTGCAATGGCAAGCCACTGAGAGCGGCACGTAGCAGCAGCTCTTCCGCACCACCACTGCCACCCAAGCCTAGCGCCAAGGCCTTGGCTGCTTGTGACAATGCTCCCTGCTCTCCTGAACGAGAGACACTGACTAGCACTGCTGCAGAGCTGGAGCTGGGGAGCTCTGTGGCCCGCAGGCCCTCCCTACACCGCTCTAAGTCAGACCTGAGTGACCGGTATGCTCGGGCCGGTGCTGACGTGGAGCGCTTCTTCAACTATTGTGGGCTGGATCCCGAGGAGCTGGAGAGTGTAGGTGTGGAAAGCTTTGCTAGGGCAAACTCTGACATTGTGTCGCTTAACTTCCGTAGTGCCAGCATGATCAGCTCCGACTGTGAGCAGTCACGGCATAGCAATGACGACCTGACCGATGAAGAAGATGACGCTGGGGAGCGTGTTCCCTATGGAATTTCTGCTGTTGAACGTAACGCCCGGATCATTAAGTGGCTCTACAGCATTAAACAGGCACGAGAGTCTCAGAAAGTCTCCCATGTCTAAAAGAAAGAGCAGACCTCCCCAATCCAATCTGAACTTGGTACTTGCTTATTTTTGCAATTCATGCACTGTCTTTAAATCTTGAAAGATTACATGGCAAAGCCTTTTGAGTTACCAGCTCTTTTTGAGTCGCTTTTGCATTCAGTGTTCTCTGTCTTCTGAATCTGCATGACTCCTTAGAAACTCAGCCTCTTTGCGGCCTCAAGGTAATGCAGCTCATGTAGAAGCCTCTGTAAAAATGGTTGCGTCCACGCAATCTTTATGCAGAGAACAATTCGTGTTTCcccattttatttagttttgcctCTGTCGGTCAAATGTTTTGATGCCAGCACCTTTCAGGTGCTTCTTATTTCACTTGGGCACACTGAGCCAGGAAGCCATATCTGTATGAATGCAGAGCTGCAGTGTGTTTAAATCTCTTTTGATCCTCTCTTTATCCGTTACTTTCTTTTTTGACTTGTTCTCATGATGGATACAAGCTCAATGTATATAAACCTCTGTGAATAGGCGCAGCAGAAGCATGTTTTAGTCTATTCTTCAGATCTCCCCCACCGACTTCTCTCAGTCAGCCTTGCACTGGTCATGTTGTTCTGGCAGTGTCATGACACCATCCAGCTTCATGTGGTTTGTTTTCACCTGTCTGTCATCCATGAAGTTCCTGTTTGGCGATTGATCATTTTTGTGGTCCTATTGTTTGGAAAGGTGTAAATGCTGTAAGAATATGTATATAATTTTCAGAGTTGTCAGAAAATCATTGTGTGAtgatgagtctcctgttttcctCCATAGCTCCTGGTCTGTCTGTCCCTGCTCTTGCATCGTGAGGCTGTGTGAGACTTTGTCCATGAGCAAATCTGTATGACACTGTTGTTGCAATGACATATATGTTCGGTATATTGAAGTTTGAGCTGTTACTTAAAAATTTCATCAAGACGTTTTGTTCATGTTTAGTTCTTTTTCATTTCAATAAATGGCTGATTTTGCCAACTTTTGCCATC
>TCONS_00033812
CAGCGCAGCGTGTGGCTCTCCTGGAACAACAAACCCACATACGGAGAGCATATGCTAATGCCTCACTCAGCGTTTATAATCAGCGCATTTAGGATGCAAAGAAAGAAGAGTTAAATGAGGGAGGAAATAAAGGTCTATTCTGGATCTAAGGCTCATGATGCAGTGAGATTCAATAAGCTGGTAGGTGCTGCCCAACGCAAGCTTTTCAGCTCCAGTCGACAGCGTACGAGCACGGAAATATACTGCAGCATCTTCATTCATTTGAAGTGTTTGGGCGCAGTTCATAAAGGtaa

Function

symbol description
fam110b Predicted to be located in cytoplasm and microtubule organizing center. Is expressed in brain and epiphysis. Orthologous to human FAM110B (family with sequence similarity 110 member B).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050626-70 Predicted to be located in cytoplasm and microtubule organizing center. Is expressed in brain and epiphysis. Orthologous to human FAM110B (family with sequence similarity 110 member B).

Ensembl:

ensembl_id ENSDARG00000088073

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032169 False 2620 mRNA 0.51 2 22208404 22230326
TCONS_00032170 False 2701 mRNA 0.51 3 22208406 22286828
TCONS_00033812 True 293 lncRNA 0.46 2 22286734 22292414

Neighbor

gene id symbol gene type direction distance location
XLOC_016324 cyp7a1 coding downstream 55607 22150134 ~ 22152797 (-)
XLOC_016323 rab2a coding downstream 360469 21821683 ~ 21847935 (-)
XLOC_016322 chd7 coding downstream 387707 21765670 ~ 21820697 (-)
XLOC_016321 C2H7orf25 coding downstream 582911 21620177 ~ 21625493 (-)
XLOC_016320 ralab coding downstream 589775 21608352 ~ 21618629 (-)
XLOC_016327 NA coding upstream 21337 22313751 ~ 22315063 (-)
XLOC_016328 NA coding upstream 48440 22340854 ~ 22348284 (-)
XLOC_016329 selenof coding upstream 61008 22353422 ~ 22363460 (-)
XLOC_016330 NA coding upstream 97376 22389790 ~ 22409189 (-)
XLOC_016331 BX927330.1 coding upstream 142016 22434430 ~ 22434546 (-)
XLOC_016319 NA non-coding downstream 615344 21571136 ~ 21593060 (-)
XLOC_016318 NA non-coding downstream 666361 21541606 ~ 21542043 (-)
XLOC_016316 NA non-coding downstream 825010 21381325 ~ 21383394 (-)
XLOC_016314 CU464125.1 non-coding downstream 887720 21312742 ~ 21320684 (-)
XLOC_016313 NA non-coding downstream 999845 21195528 ~ 21208559 (-)
XLOC_016338 NA non-coding upstream 415325 22707739 ~ 22727431 (-)

Expression


Co-expression Network