XLOC_016329 (selenof)


Basic Information

Item Value
gene id XLOC_016329
gene name selenof
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22353422 ~ 22363460 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032171
GGATGTGTGTGACGTACTTCCTGCTGAGCCTCAGCGACTGGGAAAGAAACAGTCATGGCGGGGGAGGTGTATCTGCTTTGGTTGCTGCCGTTATTACAGGGGTTGGCGTCATATggagcagagctctcatctgagGCTTGCAGGGAGCTGGGGTTCTCCAGCAATCTCCTGTGTAGCTCCTGTGAGCTTCTGGGTCAGTTCAGTCTGAACCAGCTAGACCTTCCCTGCAGGCAGTGCTGCCAAGAGGAGGCTCAGCTGGAGAACAGGAAGCTCTACCCAGGAGCCATCCTTGAGGTCTGTGGATGAAAACTGGGGAGGTTCCCTCAAGTCCAAGcttttgtCAGGAGTGACAAGCCAAAGTTGTTCAGAGGGCTTCAAATCaagTATGTGAGAGGCTCGGACCCTGTACTAAAGCTGTTGGACGATAACGGGAACATCGCTGAAGAGCTCAGCATCCTCAAGTGGAACACAGACAGCGTTGAAGAATTTCTTAGTGAGAAGTTAGAGCGAATTTAAACGCAGTTTCATAGTCAAAATCCAATTTtcacgtttttttttattatgtcaatCAAGCCGATTTAAAGGACCACGCTTCATAAAAATCATTCTTCCGTTTTTTTTGGGAATATCTGTACTAAATTTGGTTTATTTCTATGCTACGTGAATTTGTATTGTTGATTGTTGCTGAGGGGCTTTTTATACCTCTTGTTGTCTGAGTGAACTTAGTGAAGCTTGTTGAATATGCTGGATTGATGAAGCTTGTGGCGGGGACTCAGAAACACACGCTTGTGTAGATTTGCACTTTAGTGAAGGCCTGACTGTAAACCACTCTCTGGCATGTCAGGCCTGAAGATCCTGTGTACATCTCTCAGCGTGTTGTTTTTGGGGAAACGTTCAAGCTTTACCACAGTGTGAGACAATTTCATTAGTGCGCACATACACAAATAAACCTGTTTTTCATATT
>TCONS_00033367
GCCTCAGCGACTGGGAAAGAAACAGTCATGGCGGGGGAGGTGTATCTGCTTTGGTTGCTGCCGTTATTACAGGGGTTGGCGTCATATggagcagagctctcatctgagGCTTGCAGGGAGCTGGGGTTCTCCAGCAATCTCCTGTGTAGCTCCTGTGAGCTTCTGGGTCAGTTCAGTCTGAACCAGCTAGACCTTCCCTGCAGGCAGTGCTGCCAAGAGGAGGCTCAGCTGGAGAACAGGAAGCTCTACCCAGGAGCCATCCTTGAGGTCTGTGGATGAAAACTGGGGAGGTTCCCTCAAGTCCAAGtttccttcagcttttgtCAGGAGTGACAAGCCAAAGTTGTTCAGAGGGCTTCAAATCaagTATGTGAGAGGCTCGGACCCTGTACTAAAGCTGTTGGACGATAACGGGAACATCGCTGAAGAGCTCAGCATCCTCAAGTGGAACACAGACAGCGTTGAAGAATTTCTTAGTGAGAAGTTAGAGCGAATTTAAACGCAGTTTCATAGTCAAAATCCAATTTtcacgtttttttttattatgtcaatCAAGCCGATTTAAAGGACCACGCTTCATAAAAATCATTCTTCCGTTTTTTTTGGGAATATCTGTACTAAATTTGGTTTATTTCTATGCTACGTGAATTTGTATTGTTGATTGTTGCTGAGGGGCTTTTTATACCTCTTGTTGTCTGAGTGAACTTAGTGAAGCTTGTTGAATATGCTGGATTGATGAAGCTTGTGGCGGGGACTCAGAAACACACGCTTGTGTAGATTTGCACTT

Function

symbol description
selenof Predicted to enable oxidoreductase activity and selenium binding activity. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum lumen. Is expressed in several structures, including axis; mesoderm; otic placode; pectoral fin bud; and pectoral fin musculature. Orthologous to human SELENOF (selenoprotein F).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0008430 selenium binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030327-1 Predicted to enable oxidoreductase activity and selenium binding activity. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum lumen. Is expressed in several structures, including axis; mesoderm; otic placode; pectoral fin bud; and pectoral fin musculature. Orthologous to human SELENOF (selenoprotein F).

Ensembl:

ensembl_id ENSDARG00000099664

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032171 False 964 mRNA 0.46 5 22353422 22363460
TCONS_00033367 True 787 lncRNA 0.46 5 22353582 22363433

Neighbor

gene id symbol gene type direction distance location
XLOC_016328 NA coding downstream 5138 22340854 ~ 22348284 (-)
XLOC_016327 NA coding downstream 38359 22313751 ~ 22315063 (-)
XLOC_016325 fam110b coding downstream 61008 22208404 ~ 22292414 (-)
XLOC_016326 NA coding downstream 84445 22265382 ~ 22268977 (-)
XLOC_016324 cyp7a1 coding downstream 200625 22150134 ~ 22152797 (-)
XLOC_016330 NA coding upstream 26330 22389790 ~ 22409189 (-)
XLOC_016331 BX927330.1 coding upstream 70970 22434430 ~ 22434546 (-)
XLOC_016332 gtf2b coding upstream 116614 22480074 ~ 22492289 (-)
XLOC_016333 znf644a coding upstream 142904 22506364 ~ 22530969 (-)
XLOC_016334 SOX14 coding upstream 201468 22564928 ~ 22575851 (-)
XLOC_016319 NA non-coding downstream 760362 21571136 ~ 21593060 (-)
XLOC_016318 NA non-coding downstream 811379 21541606 ~ 21542043 (-)
XLOC_016338 NA non-coding upstream 344279 22707739 ~ 22727431 (-)
XLOC_016339 NA non-coding upstream 395346 22758806 ~ 22762455 (-)
XLOC_016340 NA non-coding upstream 482202 22845662 ~ 22851705 (-)

Expression


Co-expression Network