XLOC_016330


Basic Information

Item Value
gene id XLOC_016330
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22389790 ~ 22409189 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033815
CAGCATCTGAATTGGGGTCGTTTTCTCCAACTATGTTGGACTGCTGCAGTCTGGCTATAGACTCTTTGGTGGGAGGCTTCTTCTCACTCGTTTTCCTTAGGTGGGATCTCTTTCCTACAAAGGTTGTATTTCGCCTGCTCCAGAGCCCACCGGCTGCCAATGTTCCTGTGAAACAATTcatgagaaagtgaaacaacagtACTGAAAATGCTGGATCTGAAACATCTGCATCAAAAGAGCCTACCAGCACTCAGAGTAATGACCACAGAAGAATGGAATCTGAAGCCACAGTTTCTCAGGAGCACAGTCGGAGCCTCCAGCAGAGACACACTCATCAAATGTCTGAAACATACACAGCATACACATGTTGAAATAGTCTGATATGAATATGggataaacatttacaaagtcaAACTTGATTGACAGCAAAAAATAGTGGCACAAACCAAGGTTACAGTAATATGTTTTAGTAAATAGGGATCATTTTAGGATGATTTAAAAGCCCAAATCtgaatgcaaatatttattttgaataaaatggttttaaatcatatttaaactaattatgttaataattgttttaaaattagaGTATTATTAGaacattttatataataacatgtacaacaaggaaaataagtattgaatatgtcactttttctcagaaaacatatttctaaaggtgctgttgactttgaagtttcaccagatgttgataataACCAAGGAAACCAATATATGCAAAGAAACAATATTTATTCCTTTATAAAATAAGTCATGcgttataaaatgaaatgatacagggaaaaagtattgaacacatgaagagaggGAGGTTtagaaaagcagtg
>TCONS_00033816
ATTGCCGATATCAGCATCTGAATTGGGGTCGTTTTCTCCAACTGTTGTATTTCGCCTGCTCCAGAGCCCACCGGCTGCCAATGTTCCTGTGAAACAATTcatgagaaagtgaaacaacagtACTGAAAATGCTGGATCTGAAACATCTGCATCAAAAGAGCCTACCAGCACTCAGAGTAATGACCACAGAAGAATGGAATCTGAAGCCACAGTTTCTCAGGAGCACAGTCGGAGCCTCCAGCAGAGACACACTCATCAAATGTCTGAAACATACACAGCATACACATGTTGAAATAGTCTGATATGAATATGggataaacatttacaaagtcaAACTTGATTGACAGCAAAAAATAGTGGCACAAACCAAGGTTACAGTAATATGTTTTAGTAAATAGGGATCATTTTAGGATGATTTAAAAGCCCAAATCtgaatgcaaatatttattttgaataaaatggttttaaatcatatttaaactaattatgttaataattgttttaaaattagaGTATTATTAGaacattttatataataacatgtacaacaaggaaaataagtattgaatatgtcactttttctcagaaaacatatttctaaaggtgctgttgactttgaagtttcaccagatgttgataataACCAAGGAAACCAATATATGCAAAGAAACAATATTTATTCCTTTATAAAATAAGTCATGcgttataaaatgaaatgatacagggaaaaagtattgaacacatgaagagaggGAGGTTtagaaaagcagtg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033815 False 851 lncRNA 0.35 3 22389790 22409178
TCONS_00033816 True 772 lncRNA 0.34 2 22389790 22409189

Neighbor

gene id symbol gene type direction distance location
XLOC_016329 selenof coding downstream 26330 22353422 ~ 22363460 (-)
XLOC_016328 NA coding downstream 41506 22340854 ~ 22348284 (-)
XLOC_016327 NA coding downstream 74727 22313751 ~ 22315063 (-)
XLOC_016325 fam110b coding downstream 97376 22208404 ~ 22292414 (-)
XLOC_016326 NA coding downstream 120813 22265382 ~ 22268977 (-)
XLOC_016331 BX927330.1 coding upstream 25241 22434430 ~ 22434546 (-)
XLOC_016332 gtf2b coding upstream 70885 22480074 ~ 22492289 (-)
XLOC_016333 znf644a coding upstream 97175 22506364 ~ 22530969 (-)
XLOC_016334 SOX14 coding upstream 155739 22564928 ~ 22575851 (-)
XLOC_016335 stk25b coding upstream 208486 22617675 ~ 22636721 (-)
XLOC_016319 NA non-coding downstream 796730 21571136 ~ 21593060 (-)
XLOC_016318 NA non-coding downstream 847747 21541606 ~ 21542043 (-)
XLOC_016338 NA non-coding upstream 298550 22707739 ~ 22727431 (-)
XLOC_016339 NA non-coding upstream 349617 22758806 ~ 22762455 (-)
XLOC_016340 NA non-coding upstream 436473 22845662 ~ 22851705 (-)
XLOC_016341 NA non-coding upstream 447916 22857105 ~ 22868720 (-)

Expression


Co-expression Network