XLOC_016326


Basic Information

Item Value
gene id XLOC_016326
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22265382 ~ 22268977 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033811
gagagagagagagagtgtgtatttACAGTAGGTGTTTCCTAGTGAGTTGTggttggaaaggcatccactatgtaaaacatattctggaatagttggcagttcattccgctgtagcaacttctgaaaatagaaactaagctgaaggaaaaataatgaatgattccaaatgatcaaaataaagcGAGCTGTCAACAGTATTGTTGGAAGAATCGTGTAATAATTGCAATCTTTAGTGATCAATTCAATGAATGTTGCCTTGATCAAATAGCCTTTTGCTTAATGCGCATTGCAATTAAATTCAGTGATGACAGAAATGCTTAATTCTGGCAGGACTGCCTGTTTTTCTGTTCGTTATGGAAATTCCACTTTTTAGTCTGTGAAAATTAATGAAAGTTGACATTTGGAGTGGGAACCTTgagttttattagttttgttgcATGTCAGGATTTTAAAGTAAATTCGACTGCCcactatatttgtattttttttgcagtcaagCCCAGAATAATTTATATCAAGATTGGTATATTTCAACTGACACAAGAAGCAGCCTTTAAATGGGAATATTACTTATTAATATCAGTCATAAAGGTTATGTTAGGGCTAATCAAAATAATCAATGTTTAAGTGGTCAGCTTACTGAATATGCCTTATTTTGTTCATGACAGTTCAGGTAGTTTCCTCTATTTAAAGTCAACAATACTGTTTTGTGGAACTGACTGAAGTGaacaagttcttttttttttcttagctaGCAGTTTGCTGATCTAGTGTGCAGCCAGACCTTCAGAGTTCAGAGTCAGACTGACTCTGGACTCCATAACAGATTTCACCCAGAAGCCATCTGACTGATTGTGAAGCAAACAGTTGCAACTCATTCAATGCCGTGTCATGTTTACGGTCATTAAAACATTGACGTCACAACAACAACACTCCAGCAAGCTGCCTGCAtgcaattccaaaaaaaaaaaaaaaatagaagagtTCTTCTCAAAGCTatgctgcattttaagcaaacacatgcaattacaaaaatacaccagcaaattaagaaaagatcttcatcagaTTGATAGCACATTTTGCAATCCTCACGATGCAAACACATTaagaaaatgcactgcattttcccacaatggAAATGTTACAAGGGGACTCAAAACATGATGGACGCTGCTGTTTAGGTTAtgattatttaggctaataaaatacaaaagacaaaatctgttaaaataaacaaacaaaaaaaaaaactcacctttcaaagatcacctaaaGCTAGTCACgataaataaacatttcacagCAGCGTCCATCATATTTTAGAGTCCCCttaaaacatttctgttgtgttctgttctttttgcaagtgttgtgagaaaatgcagcacattttttttatttgtttgcgttGCGGGAAAATGTATTGCGTTTTTTATGTGtatgcgttgtgaggatttgcagcaagtgtgctttcagagatgatgatttttttctaaatttgctggtgtttttttttttttttgtaatcgcatgggttttcttaaattgcagcttGTGTAGCTCTCTCGGCCATTGTACTATGGACAAATGTTGATATGcatagggctgggccgataaacaatattatatcgaatcacAATAAATATTCATGTAAGAAACAACGATGAGCTCTGGACGTTTTTGTTctttattgatctaagagccaatcacacagcagaaatgtgcaatgggaatctaaaagtgtgtgaAATTTTGGCCACTAAAATTTAACGGCTGAaaatatgccatttaatggaccctctaatttttgtggctttaaTCATTGTTGgtgtactcttttaaatctggaagcattaactacttacatcaaaatatatatagttcTCGTTCGACATGGAAGATAATTATCAAGATCGGAATGTTAATGCCCCCCTTGTACTTGTTTTTATAATCAACACGTAGATAAAAACAGGATCATAAAGTAATCAAATGGTTTATATTTTAGACATTCTCTGCTTTCTCTGTAGCCtccattaaaaatattatttgcagtgAAATGGTTGTTGTGAAGTATgaaatttgaaaaaaacaaaaacaaaaacttcacaCAGCATTTAATGTCCCTGTAAAATCAAATTTGCAAgacccctaccctaaaccaaaccgtcaCAGTAGTATGAGCATTTACTATTTACCTaagtgggcggtacaaggtccactTCGGATTGGACCTGGTTATTGTGATTCAGACTGCGACAAAGACATCTTGCATTTTTTAGGTGACCAATTAATCTATGCAAGTTCATCCACTgacaaaaaagtttgttttggtactATTCAGtgaaaatctgaccatttgcttctgtgtttaaAGTTACGGTCCTtatctgttgatgtcagtttaacaatattcttaaccacggcCCTTACCGTTAGGCTACAAGGGAATTATGTGCAAAGAAAGCCCCTCAActcaatattacattttatttggaaGCAACTCAGCAGCTTCCAgtttacacagactttaaataGTTTAGTCCCAATATATTATTATGTCTTTAGTATTTACctacataaaaaagaaacaaagatgTACTGTAGCGTCATCAGTGGGTCATTATAGTCGCAGTTGCATGCCTGTACTTCTAAATAAATGTAGAGTTTAAGTACTACACTATAAAGTTTTGTATGACTTGCTTTAaggtctgtttgttttatttactctCTGTTTGTATTATCTCtcatttaattataatgtaatttagCATTTGAAGAGAGACGTGAATCCAGGTTTTAAGCAGTTTAACCAATATTAGTAATAAAATATCTGGATGAAATGTTTCCTAGAAACATTTGATTTTGATCTTCatacaacaaaaagaaaaacagaaagcgACCCTTGGGAAATTTAAGTGTGTGCATTTTAAGAAGCGCCCATAAAAGTTTAATCAGCGTTGAATTATGAACATTTGATTAATCATTGCGCACTTAAATGTGAATTATGTAAATAAGCAGAGTGCACAATAAACGTAACGCTGATTTAAAGTAATTAACTGCTGAACTCTCTGAGGTTCGTCTGACTGAAGGATTAGATTGTGACCCAAATCCTCCGTCCGGGATAAAAACAGTGCATGATTTGTGCTCATATTTAGGAAACGGACTCCTAATTACAATGAAACATACAGTACCATGGTGGTGTTCCTGGTAAGATCAGAGCCGTTCTAAAACTAATCCACCTTTTAAACTTCCTGAAGGAACTTGTGATTCCTTAACCTATTCTTTCTTAATTCAACACAAACAATAGGATTAGTCTTATACATCATACAGAAGCACAATCGGCCTCCATTTTAGGAATACTTAAACTGTCGAGGCTTCATCCCAAGAGGAAAAAAATCTCTCATCACTCATCTGTTAGTGCTGAATGTCTTTCATAATGAATAAAAGGCC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0043624 cellular protein complex disassembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0051261 protein depolymerization biological_process
GO:0030239 myofibril assembly biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0051924 regulation of calcium ion transport biological_process
GO:0044057 regulation of system process biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0030424 axon cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0150034 distal axon cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005515 protein binding molecular_function
GO:0005523 tropomyosin binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033811 True 3453 lncRNA 0.35 2 22265382 22268977

Neighbor

gene id symbol gene type direction distance location
XLOC_016324 cyp7a1 coding downstream 112585 22150134 ~ 22152797 (-)
XLOC_016323 rab2a coding downstream 417447 21821683 ~ 21847935 (-)
XLOC_016322 chd7 coding downstream 444685 21765670 ~ 21820697 (-)
XLOC_016321 C2H7orf25 coding downstream 639889 21620177 ~ 21625493 (-)
XLOC_016320 ralab coding downstream 646753 21608352 ~ 21618629 (-)
XLOC_016327 NA coding upstream 44774 22313751 ~ 22315063 (-)
XLOC_016328 NA coding upstream 71877 22340854 ~ 22348284 (-)
XLOC_016329 selenof coding upstream 84445 22353422 ~ 22363460 (-)
XLOC_016330 NA coding upstream 120813 22389790 ~ 22409189 (-)
XLOC_016331 BX927330.1 coding upstream 165453 22434430 ~ 22434546 (-)
XLOC_016319 NA non-coding downstream 672322 21571136 ~ 21593060 (-)
XLOC_016318 NA non-coding downstream 723339 21541606 ~ 21542043 (-)
XLOC_016316 NA non-coding downstream 881988 21381325 ~ 21383394 (-)
XLOC_016314 CU464125.1 non-coding downstream 944698 21312742 ~ 21320684 (-)
XLOC_016313 NA non-coding downstream 1056823 21195528 ~ 21208559 (-)
XLOC_016338 NA non-coding upstream 438762 22707739 ~ 22727431 (-)

Expression


Co-expression Network