XLOC_016327


Basic Information

Item Value
gene id XLOC_016327
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22313751 ~ 22315063 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033813
ATGGGTCCATCTATCACAGGAGGCCACGAAAAACCATGCGGCAAGATGATGATGCTACGTCACATTGTGGAAAACTGGATAGATTTAGACATCTTACATGCTGGAGCAGGATTTGCAAGGCAAGAAAACAGAGAAAACCTGAATTCAAAACATGAAACTGGTGTGTgcagtgatgatgatgaagaacagcagtgtgctgatgaagtaaatgtTGAAGATGCTGTAGTGCCATGGACAAGACCCTGCATCCCTCCACCTGCCTGCGTGTCCTCATCTGAGCCAGATGCTGGTGTGGTCTCTTCATCTTCAGTATGAATCGGTTTCTCAGGCATGGACAGCCTCACCTCACAACTCTGTTCCAGTCTGACTGCAGCACTGAGGGATGTGATGGCAAAAACAAGTGAAGTCCAGCATGCAGCAGAACATGGGGTTTTGTCTGAAATACATGATTGTTAGAATAAGTTTGAATAAAGCTTAGTTTCG
>TCONS_00033365
AGAGTTTGTTGTTGACAACAACCGGTAGCGCTATGACTTTTTCAAGGCGTTCAGATTTGCGTGCACTATTCCACGTCGTATCCGTATCAACTCGTGAAAGAGAAAGCGAGAAATCTCCTACTGCTTCTGTCCACATTCTGAAGTGCTCATCAGATGGGTCCATCTATCACAGGAGGCCACGAAAAACCATGCGGCAAGATGATGATGCTACGTCACATTGTGGAAAACTGGATAGATTTAGACATCTTACATGTAAGATTTGCAAGGCAAGAAAACAGAGAAAACCTGAATTCAAAACATGAAACTGGTGTGTgcagtgatgatgatgaagaacagcagtgtgctgatgaagtaaatgtTGAAGATGCTGTAGTGCCATGGACAAGACCCTGCATCCCTCCACCTGCCTGCGTGTCCTCATCTGAGCCAGATGCTGGTGTGGTCTCTTCATCTTCAGTATGAATCGGTTTCTCAGGCATGGACAGCCTCACCTCACAACTCTGTTCCAGTCTGACTGCAGCACTGAGGGATGTGATGGCAAAAACAAGTGAAGTCCAGCATGCAGCAGAACATGGGGTTTTGTCTGAAATACATGATTGTTAGAATAAGTTTGAATAAAGCTTAGTTTCG
>TCONS_00033366
GGATTTGCAAGGCAAGAAAACAGAGAAAACCTGAATTCAAAACATGAAACTGGTGTGTgcagtgatgatgatgaagaacagcagtgtgctgatgaagtaaatgtTGAAGATGCTGTAGTGCCATGGACAAGACCCTGCATCCCTCCACCTGCCTGCGTGTCCTCATCTGAGCCAGATGCTGGTGTGGTCTCTTCATCTTCAGTATGA

Function

GO:

id name namespace
GO:0015871 choline transport biological_process
GO:0015220 choline transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033813 False 483 lncRNA 0.45 3 22313751 22314910
TCONS_00033365 False 630 lncRNA 0.45 3 22313751 22315063
TCONS_00033366 True 207 lncRNA 0.46 2 22313919 22314232

Neighbor

gene id symbol gene type direction distance location
XLOC_016325 fam110b coding downstream 21337 22208404 ~ 22292414 (-)
XLOC_016326 NA coding downstream 44774 22265382 ~ 22268977 (-)
XLOC_016324 cyp7a1 coding downstream 160954 22150134 ~ 22152797 (-)
XLOC_016323 rab2a coding downstream 465816 21821683 ~ 21847935 (-)
XLOC_016322 chd7 coding downstream 493054 21765670 ~ 21820697 (-)
XLOC_016328 NA coding upstream 25791 22340854 ~ 22348284 (-)
XLOC_016329 selenof coding upstream 38359 22353422 ~ 22363460 (-)
XLOC_016330 NA coding upstream 74727 22389790 ~ 22409189 (-)
XLOC_016331 BX927330.1 coding upstream 119367 22434430 ~ 22434546 (-)
XLOC_016332 gtf2b coding upstream 165011 22480074 ~ 22492289 (-)
XLOC_016319 NA non-coding downstream 720691 21571136 ~ 21593060 (-)
XLOC_016318 NA non-coding downstream 771708 21541606 ~ 21542043 (-)
XLOC_016316 NA non-coding downstream 930357 21381325 ~ 21383394 (-)
XLOC_016314 CU464125.1 non-coding downstream 993067 21312742 ~ 21320684 (-)
XLOC_016338 NA non-coding upstream 392676 22707739 ~ 22727431 (-)
XLOC_016339 NA non-coding upstream 443743 22758806 ~ 22762455 (-)

Expression


Co-expression Network