XLOC_016332 (gtf2b)


Basic Information

Item Value
gene id XLOC_016332
gene name gtf2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22480074 ~ 22492289 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032173
ACCAGAGAGTCACTGCCGTGGACAACAGACAGAAACAGTATGGCGTCAACGAGCCGTGGAGACTCTCTTCCCAAAGTGCAATGCCCGAATCACCCCGATGCCCTGCTGGTGGAGGACTACAGGGCAGGAGACATGATCTGTCCTGAATGTGGCCTTGTAGTAGGAGACCGTGTAATTGATGTGGGGTCAGAGTGGAGAACGTTCTCCAATGAGAAGGCAACCAAAGATCCGTCTCGTGTTGGCGATGCTCAAAACCCTCTTCTCAATGGAGGAGACCTCACTACCATGATCAGCAAGGGAACAGGTGCGGCAAGCTTTGATGAGTTTGGAAATTCCAAGTACCAGAATCGGAGAACCATGAGCAGCTCTGATCGAGCCATGCTCAATGCCTTCAAAGAGATCACCACCATGGCTGACAGGATCAACCTCCCCAGGAACATTATTGATCGAACAAACAACTTGTTCAAACAGGTTTATGAACAGAAGAGTCTGAAAGGCAGAAGTAATGATGCTATTGCTTCAGCCTGCCTCTACATCGCATGCAGACAGGAGGGCGTCCCAAGAACATTTAAAGAAATCTGCGCAGTGTCTCGGATCTCAAAGAAGGAGATTGGTCGCTGCTTCAAGCTAATCTTGAAGGCTCTGGAGACGAGTGTGGATCTCATCACAACTGGTGATTTCATGTCACGTTTCTGCTCCAACTTGGGTTTGCCTAAACAGGTGCAAATGGCGGCCACTTACATTGCCAGAAAGGCCGTGGAACTGGATTTGGTTCCAGGTCGCAGTCCTATCTCAGTGGCGGCCGCAGCCATTTATATGGCATCTCAAGCATCTGCCGAGAAGAAGACACAGAAAGAGATTGGAGACATCGCTGGAGTGGCAGACGTGACCATCCGCCAGTCCTACCGTCTCATCTACCCTCGCGCCGCTGATCTCTTTCCTCCCGACTTCAAGTTCGACACACCAGTGGATAAACTGCCTCAGCTGTGAACACCACGTGCCCCTCGCTCACCCGCTCTTTGTACTTTCAGAATTTTTGCCCTTCTCTCTTTGAAATTCGCAACGTTTGCTCTTCCCTGCGAAGGCTGGAGTTTTTTAAAAAGACGACGGCAGGGATTCAACAAAGTACAGAAGACACATTCCAAGATAAACGCAGTTTGCAGGCTGTACTttcatttgtgtgtatatatattgtacataTGTCCAAGTGAGAATTCGATTGGTGGTTGCGACTAGGCATATTTCTTACTGTAACATTTTCTTTTGTAGGAAATGATTTTGTTAGCTTGTTTGGATTCTATTTagtaacttaaataataaatgcttttcaGAAAAGCATGGTGAACGTCTGGGAAACACCCCTAAGAAGGTTTACAGGTTTACCTTGAGATTTGAAAGCGTGTAGCTCACAAATGGTTTTATTTCCCCCTCTCTTTTTTCGTTTCTTGAGGGGAATATGGTTTCTGTTAGTGTTTCTGTTCCTGTATTTGCAGCTCAGTTGTTCTAAAAGATTTCACGAAACACCACAGAATCCTTTTTGAAGTGGCAATAAACCATTTACAAAGAGACTCATGACTTtccataataaacatttaattttttgcaTTCA

Function

symbol description
gtf2b Predicted to enable several functions, including RNA polymerase II core promoter sequence-specific DNA binding activity; RNA polymerase II general transcription initiation factor activity; and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II core complex assembly; protein acetylation; and transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within transcription preinitiation complex assembly. Predicted to be part of transcription preinitiation complex. Predicted to be active in nucleus. Orthologous to human GTF2B (general transcription factor IIB).

GO:

id name namespace
GO:0051123 RNA polymerase II preinitiation complex assembly biological_process
GO:0001174 transcriptional start site selection at RNA polymerase II promoter biological_process
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070897 transcription preinitiation complex assembly biological_process
GO:0005634 nucleus cellular_component
GO:0097550 transcription preinitiation complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0017025 TBP-class protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding molecular_function
GO:0001139 RNA polymerase II complex recruiting activity molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko05203 Viral carcinogenesis
ko05017 Spinocerebellar ataxia
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030131-3544 Predicted to enable several functions, including RNA polymerase II core promoter sequence-specific DNA binding activity; RNA polymerase II general transcription initiation factor activity; and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II core complex assembly; protein acetylation; and transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within transcription preinitiation complex assembly. Predicted to be part of transcription preinitiation complex. Predicted to be active in nucleus. Orthologous to human GTF2B (general transcription factor IIB).

Ensembl:

ensembl_id ENSDARG00000103578

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032173 True 1609 mRNA 0.46 7 22480074 22492289

Neighbor

gene id symbol gene type direction distance location
XLOC_016331 BX927330.1 coding downstream 45528 22434430 ~ 22434546 (-)
XLOC_016330 NA coding downstream 70885 22389790 ~ 22409189 (-)
XLOC_016329 selenof coding downstream 116614 22353422 ~ 22363460 (-)
XLOC_016328 NA coding downstream 131790 22340854 ~ 22348284 (-)
XLOC_016327 NA coding downstream 165011 22313751 ~ 22315063 (-)
XLOC_016333 znf644a coding upstream 14075 22506364 ~ 22530969 (-)
XLOC_016334 SOX14 coding upstream 72639 22564928 ~ 22575851 (-)
XLOC_016335 stk25b coding upstream 125386 22617675 ~ 22636721 (-)
XLOC_016336 thap4 coding upstream 160692 22652981 ~ 22660232 (-)
XLOC_016337 agxtb coding upstream 184454 22676743 ~ 22688651 (-)
XLOC_016326 NA non-coding downstream 211097 22265382 ~ 22268977 (-)
XLOC_016338 NA non-coding upstream 215450 22707739 ~ 22727431 (-)
XLOC_016339 NA non-coding upstream 266517 22758806 ~ 22762455 (-)
XLOC_016340 NA non-coding upstream 353373 22845662 ~ 22851705 (-)
XLOC_016341 NA non-coding upstream 364816 22857105 ~ 22868720 (-)
XLOC_016343 BX649390.1 non-coding upstream 404996 22897285 ~ 22897401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_06503758_06508636 GTF2B, GTF2B.L, TF2B coding CI01000004 null 6503445 ~ 6508943 (+)