XLOC_016337 (agxtb)


Basic Information

Item Value
gene id XLOC_016337
gene name agxtb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22676743 ~ 22688651 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032181
TGATGTCACATTATTAAGAATTTCAAACGGTCTTTTCAAGGGTCTTGAGAACTCATGGAGGCATCACACAGAGGTCGCACAGCATCTCTGGAAGGGCTTGGAAGATCTGGGATTGAAGCTGTTTATTAAGGACAAGGATCTGAGATTGCCCTCAGTCACCACCATTGCCATTCCTGAGGGGTATAACTGGAAGGAACTGCTGGCTTACATAATGAAGCATCACCAGATCGAGTTTACAGGAGGACTCGGGCCCTCCGTTGGCATGGTATTGCGGATTGGGCTCATGGGATACAACTGCAAAAAGACCAATGCTGATAAGGCTCTTGCAGCTCTTGAAGACGGTTTAAAGCAGTGTCGAAAAAGCAAAGCCTAAAGACCTGCaatttttgctgtattttgtgATGCTTGTAGTATAAAAATGGCCTGCTGATGTAAATGAAGAGCTATTATATTTAATGTGTTCATAACAGTTGCTGTAATGGAGCCTATGTTGATTAGAAATTGTACATTATGACTCCATTTTAATCAAAACCAAGCTATTTTGAATGGTGCTTCTCATTGTCCTTTGTAACATTACAAGCATCTCTCCAGCACTTGAATGACcctccgaaaaaaaaaaaaagaatttattgAGAAATAAATCATGAATATAAATTGAACATTTTGGTTCTACAGTGCAAGTTTATTTGCATAGTAAACAGTGCTACGTATTCTCATTCTTGACAATGAGAAACAACATGACAAAGGTGTGTAAACAACATTTACCAATTTTAAATTGATGAAAAATTAAGTGCTTTGagatttgctgttttttttttttcatttggaaaCGTTAAAGCCCTTGAAACTCCACAACAAAACATTTCAGATATCTCCATCAacaaagagcaaaaaataaataaaataggaaaataaaaatattctaaatgaT
>TCONS_00032182
TATCCTTCAGTCGAACAGCAGAGCGAGAGGAATCATGATGCCGAGGACTGTCCTGTCCAGGTGCGCGCGCCTGACGCAGCAGGTGCCGCTGGAAAGCGCGCTCTCCGGCAAACAAAGTGTTCAGCGTGGGATGTCGTCTCTCAGCGTCCCTCCACCGGCCTGCATGCTCCGGCCGCTCGAGGCTCCGTTGCGGTACTTGTTTGGACCAGGACCATCCAATGTGCCGCCTCGTGTTTTGGCGGCAGGAGGGAGACCTATAATAGGTCACATGCACTCGGAAATGTTCGGGATTATGAATGAGATCAAGCAGGGAATTCAGTATGCTTTTCAGACCAATAACAGCATGACTCTGGCCATGAGTGGCTCTGGCCACACAGCAATGGAGTGTGCAGTGTTCAACATCGTGGAGCCCGGAGAAAGCGTTTTGGTTGCAGTTAATGGAATCTGGGGGGAACGAGTCGCAGAAATTGCAGAGCGCATGGGTGCAAAGGTTCACACATTGGCAAAAGCACCAGGAGGACATTTCACAAATGCAGAAATTGAACAGGCTCTGGCCAAACATAAGCCAGTTCTCTTCTTTCTCACACATGGAGAGTCATCAGCTGGTTTGGTGCACCCAATGGACGGAATTGGAGATGTGTGTCGCAAACACAACTGTTTGCTTTTAGTGGATTCAGTGGCATCATTGGGAGCTGCTCCACTTTTAATGGACCAACAAAaaATCGATATCCTGTACACTGGATCCCAAAAGGCCTTGAATGCTCCACCCGGCACAGCGCCGATTTCATTCAATGAAAGAGCATGCCAGAAGATGTTTAACAGGAAAACAAAACCAGTGTCCTACCTCCTTGATATGAACTATTTGTCCAATTACTGGGGTAATGATGGCAAACCAGACAGAATATACCATCACACAGGACCTGTGTCTGGTTTCTTTGCCCTGAGGGAAAGTCTAGCCATCCTTGCTGAAACGGGTCTTGAGAACTCATGGAGGCATCACACAGAGGTCGCACAGCATCTCTGGAAGGGCTTGGAAGATCTGGGATTGAAGCTGTTTATTAAGGACAAGGATCTGAGATTGCCCTCAGTCACCACCATTGCCATTCCTGAGGGGTATAACTGGAAGGAACTGCTGGCTTACATAATGAAGCATCACCAGATCGAGTTTACAGGAGGACTCGGGCCCTCCGTTGGCATGGTATTGCGGATTGGGCTCATGGGATACAACTGCAAAAAGACCAATGCTGATAAGGCTCTTGCAGCTCTTGAAGACGGTTTAAAGCAGTGTCGAAAAAGCAAAGCCTAAAGACCTGCaatttttgctgtattttgtgATGCTTGTAGTATAAAAATGGCCTGCTGATGTAAATGAAGAGCTATTATATTTAATGTGTTCATAACAGTTGCTGTAATGGAGCCTATGTTGATTAGAAATTGTACATTATGACTCCATTTTAATCAAAACCAAGCTATTTTGAATGGTGCTTCTCATTGTCCTTTGTAACATTACAAGCATCTCTCCAGCACTTGAATGACcctccgaaaaaaaaaaaaagaatttattgAGAAATAAATCATGAATATAAATTGAA
>TCONS_00032183
CTTTCTCACACATGGAGAGTCATCAGCTGGTTTGGTGCACCCAATGGACGGAATTGGAGATGTGTGTCGCAAACACAACTGTTTGCTTTTAGTGGATTCAGTGGCATCATTGGGAGCTGCTCCACTTTTAATGGACCAACAAAaaATCGATATCCTGTACACTGGATCCCAAAAGGCCTTGAATGCTCCACCCGGCACAGCGCCGATTTCATTCAATGAAAGAGCATGCCAGAAGATGTTTAACAGGAAAACAAAACCAGTGTCCTACCTCCTTGATATGAACTATTTGTCCAATTACTGGGGTAATGATGGCAAACCAGACAGAATGTAAGTTTCTAAGCTAATCCATTTGTGTTCCTATTGttccagtgtttcccaaccctgttgcTAAAGGCACACCAGCAATACACATTTTCAACTTCTCTTAAACCAAAAACACCTAAATCAACTCATTAAGGGACTCCAAAACCTAAAATGATTGGTtaagataagggagacatccaaaatatgtattgTTTGTGTGCTTCCAGGAATTGGGAAGTTGGAAAACAGTGGTCTAGAGCAGAGGTtcccaatcttttttttttgcctgaggcCCTCTTTTTCCCCGGAAAATATTGTAAgccccccctcc

Function

symbol description
agxtb Predicted to enable alanine-glyoxylate transaminase activity and serine-pyruvate transaminase activity. Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in mitochondrion. Predicted to be active in peroxisome. Human ortholog(s) of this gene implicated in primary hyperoxaluria type 1. Orthologous to human AGXT (alanine--glyoxylate and serine--pyruvate aminotransferase).

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0046487 glyoxylate metabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0005777 peroxisome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function
GO:0008483 transaminase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010302-3 Predicted to enable alanine-glyoxylate transaminase activity and serine-pyruvate transaminase activity. Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in mitochondrion. Predicted to be active in peroxisome. Human ortholog(s) of this gene implicated in primary hyperoxaluria type 1. Orthologous to human AGXT (alanine--glyoxylate and serine--pyruvate aminotransferase).

Ensembl:

ensembl_id ENSDARG00000018478

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032181 False 931 lncRNA 0.37 3 22676743 22677851
TCONS_00032182 False 1592 mRNA 0.47 11 22677015 22688651
TCONS_00032183 True 634 lncRNA 0.43 4 22682860 22686658

Neighbor

gene id symbol gene type direction distance location
XLOC_016336 thap4 coding downstream 16511 22652981 ~ 22660232 (-)
XLOC_016335 stk25b coding downstream 40022 22617675 ~ 22636721 (-)
XLOC_016334 SOX14 coding downstream 100892 22564928 ~ 22575851 (-)
XLOC_016333 znf644a coding downstream 145774 22506364 ~ 22530969 (-)
XLOC_016332 gtf2b coding downstream 184454 22480074 ~ 22492289 (-)
XLOC_016338 NA coding upstream 19088 22707739 ~ 22727431 (-)
XLOC_016339 NA coding upstream 70155 22758806 ~ 22762455 (-)
XLOC_016340 NA coding upstream 157011 22845662 ~ 22851705 (-)
XLOC_016341 NA coding upstream 168454 22857105 ~ 22868720 (-)
XLOC_016342 myo7bb coding upstream 191954 22880605 ~ 22927958 (-)
XLOC_016331 BX927330.1 non-coding downstream 242197 22434430 ~ 22434546 (-)
XLOC_016330 NA non-coding downstream 267554 22389790 ~ 22409189 (-)
XLOC_016328 NA non-coding downstream 328459 22340854 ~ 22348284 (-)
XLOC_016327 NA non-coding downstream 361680 22313751 ~ 22315063 (-)
XLOC_016326 NA non-coding downstream 407766 22265382 ~ 22268977 (-)
XLOC_016343 BX649390.1 non-coding upstream 208634 22897285 ~ 22897401 (-)

Expression


Co-expression Network