XLOC_016310 (nebl)


Basic Information

Item Value
gene id XLOC_016310
gene name nebl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 21076585 ~ 21082695 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032148
CGTCTACAGGACCGCCAGTTCCCCGTGGTCATTGTTTGAAGGCTCCTCCAACAGTCTCAGTGGGAGATGTTTGTTCAAATCTCACGCATCTTTGCTCCAGTTTCCTCACTGCGAGAGCAGCCGCACGCTGATAAACACGCGCGAATTTAAAGCTCTGCGACATAAACTCGCCACATGCTGCAACAAATCTGACATACCTTTGAAATTAAGCAACAGCTTCTGGATTATCGGAGTTGTCGGAGAAGTTATGCTATTTTCCCAGACCGTCGCAACGGCTTCAAAATGAACCCTCATTGCGCGCGCTGTGGAAAAATCGTCTACGCAACAGAGAAAGTGAACTGCCTGGATAAGTATTGGCACAAAGGATGCTTCCATTGTGAGGTGTGTAAAATGACTCTCAACATGAACAACTACAAGGGATATGAGAAGAAGCCCTACTGCAACGCGCACTACCCAAAACAGACCTTTACTATAGTGGCAGACACTCCTGAAAACCTTCGACTGAGACAGCAAAGTGAGCTCCAAAGTCAGgtgaAATACAGGAAGGATTTTGAACAGAGCAAGGGACGGGGCCTCAAATTTGTCCTGGATACTCCTGAGCTACAGAGACTGAGGAAGGCCCAGGATCAGATCAGTAATGCGAAATATCATAAGGACTTTGAGGTGTCAGGTCTGCAAGGGGTCACTCAGGGAATGCGTGGGACGTACGCGGTGCGATCTCAGATGACGCCGAACAATGAAACTGTGGCTAACAGCACACACAAGGCTGTACATCAGTACATTATGGAGATGGACCGAAGACCTGGTGTTATCGTGGCACCTGTTCTTCCTGGTGCATACTATCCCAACAGTCACAGCCATGGCCACAGCTATATGCATCAGACCAGTATGCATTCACTGAGGTCAATGCAGCTGAGGTCCCAGCAGATGAGCATGACTGTGTACAGGGCTCTGTATGACTACATGGCGCAGGACTATGATGAGGTGTCATTTCGGGACGGGGACATCATTCAGAACGTGCAGCCGATCGATGAAGGTTGGATGTATGGTACAGTACAGCGGACGGGCAGATCAGGAATGCTGCCTGCCAACTATGTTGAGGGCATTCGCTAGAGTTCCTACAGCACATCTGAATCAGAATTGTTCATAGGCATCAAATGGTCACAGGTACAACTCTATTTTAATAGTGCTAATTgtgtttataatgttatatttttttcattttgttactCTGCATTTGAAGTGAATTTACATTACCTTTTGAAAGTCTGGGGTCtgaaagatttgtttttttaaacaattaaatatcttTATTAGATAAAAACTGCTTTGTTAAATAAGATGTTTTTGAATACATGTGGTTCTTTTAAACTTAAGTCATCGAGTAATCCTGaaagtacaataaaaacaaaaagaaaaatcactgtttcaacaacaacaacaaaaaaagtttataatGGATCAGAAATCAACCTCTTCCATTAAAGGTGATTTTAGGGGCATTTTTAAAACCATAaacccatttttattttaatgtataattatattttacttaatGTTCTTAATGCAACAAATCGCAAGAAATCTTGTTCAACATCTGAAAAATTcgaaaaaaatcttttttgaatgatttcatttcAACTTTGACAGCTTTAATATGGATATGGACACACTGGGGTGCAGTTTTTGCACATGTCcgtgtttatgaatagattacaccaTAAAGAACATGAGTAATCTTGACAAACTATACAACAGTCTAAAGCTACATCCCTCAAGCAGCCATTGTAGCTAGCTAGTTGCTTTTCAATGGGAAGCTTGTaaagatttaaatatatattataatgttacTTAATATAACAAATCGTATGAAAACCAATTTAACCTCTGAACAATTcaaaaattaaatttgttttatatttcacTTCAATTTTGACAGACTTTATAgatttgttttaagataactTCTGACTCTGAGGTAAAATTCTGATAAAGAATGACATTAATATGAAACGTTTCctggaaaataattttaaaaaaatctatttactgtaaaattgtaACAGTATTTCATACAAGTCTGAGAGACttcatccaaaaaaaataaaataaataaatcgtacAGTCCCCAAACTTTTAAATGGTAGTATGTAATGTAATGACAAGTTTTGTACCAATATTGTTTTTACTTGATAAATGTGTCGCATACAAAATGTAAAGGATTGTAAAGAGGATTAAATATGGACAAATAGCATTATTTTTAACAGCATGTTGCTCTataaaacatcaatatctgtgtaATATGTTCTGCATATTAAATGTTGTGCAAAAAAACCCTGAATTTTCCTTCTACATTAAAGCATGACATGTTTAAAACACCA

Function

symbol description
nebl Predicted to enable actin filament binding activity. Predicted to be active in focal adhesion. Is expressed in heart. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human NEBL (nebulette).

GO:

id name namespace
GO:0005925 focal adhesion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-151 Predicted to enable actin filament binding activity. Predicted to be active in focal adhesion. Is expressed in heart. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human NEBL (nebulette).

Ensembl:

ensembl_id ENSDARG00000021200

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032148 True 2381 mRNA 0.38 7 21076585 21082695

Neighbor

gene id symbol gene type direction distance location
XLOC_016309 nrn1b coding downstream 82459 20991985 ~ 20994126 (-)
XLOC_016308 lyrm4 coding downstream 94678 20980162 ~ 20981907 (-)
XLOC_016307 ptgs2a coding downstream 152721 20916497 ~ 20923864 (-)
XLOC_016306 pdca coding downstream 186156 20882954 ~ 20890429 (-)
XLOC_016305 tpra coding downstream 209827 20811677 ~ 20866758 (-)
XLOC_016311 NA coding upstream 39493 21122188 ~ 21124115 (-)
XLOC_016312 bmi1b coding upstream 82235 21164930 ~ 21170517 (-)
XLOC_016313 NA coding upstream 112833 21195528 ~ 21208559 (-)
XLOC_016314 CU464125.1 coding upstream 230047 21312742 ~ 21320684 (-)
XLOC_016315 klhl40a coding upstream 244262 21326957 ~ 21352101 (-)
XLOC_016303 FO681336.1 non-coding downstream 318886 20757582 ~ 20757699 (-)
XLOC_016302 AL954134.1 non-coding downstream 372062 20699481 ~ 20704523 (-)
XLOC_016298 NA non-coding downstream 613662 20453614 ~ 20462923 (-)
XLOC_016299 NA non-coding downstream 617576 20457947 ~ 20459009 (-)
XLOC_016295 NA non-coding downstream 928216 20124994 ~ 20148369 (-)
XLOC_016316 NA non-coding upstream 298630 21381325 ~ 21383394 (-)
XLOC_016318 NA non-coding upstream 458911 21541606 ~ 21542043 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_07196152_07199384 NEBL coding CI01000004 null 7196152 ~ 7199414 (+)