CI01000004_07196152_07199384 (NEBL)


Basic Information

Item Value
gene id CI01000004_07196152_07199384
gene name NEBL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7196152 ~ 7199414 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_07196152_07199384.mRNA
ATGAACCCTCATTGCGCGCGCTGTGGGAAAATTGTCTACGCAACTGAGAAAGTCAACTGCCTGGACAAGTATTGGCACAAAGGATGCTTCCATTGTGAAGTGTGTAAAATGACTCTCAACATGAACAACTACAAGGGATATGAGAAGAAACCCTACTGCAACGCGCACTACCCAAAACAGACCTTTACAATCGTGACAGACACCCCTGAGAACCTACGGCTGAGACAGCAAAGTGAGCTCCAAAGTCAGGTCAAGTACAGGAAGGATTTTGAACAGAGCAAAGGTCGGGGCCTCAAATTTGTTTTGGATACTCCAGAGCTGCAGAGACTGAGGAAGGCCCAGGATCAGATCAGTAATGCCAAGTATCACAAGGATTTTGAGGTGTCAGGTTTGCATGGGGTCACTCAGGGATTGCGTGGAACGTACCTGGTACGGCCTCAGGTGGCACCCAGCCACGAAACGGTGGGGAACAGCACACACAAGGGTGTCCATCAGTGCATAATGGAGTTGGATCGAAGACCTGGTGTCATTGTGGCACCTGTTCTTCCTGGTGCCTACTATCCCAGTGGCCACAGCCATGGGCACAGCTACATGCATCAGACCAGCATGCATTCACTGAGGTCAATGCAGCTGAGGTCACAACACACGAGTATGGGAAGTATGAGCATGACTGTGTACAGGGCCCTGTATGACTACACGGCACAGGATTACGATGAGGTGTCATTCCGGGATGGTGACATCATTCAGAACGTGCAGTCGATTGACGAAGGCTGGATGTATGGAACGGTACAGCGGACGGGGAGATCAGGTATGCTGCCTGCCAACTACGTAGAAGGAATTCGCTAGGTGTCCTACATCTCTCTCACTGAACCTCGA

Function

symbol description
nebl Predicted to enable actin filament binding activity. Predicted to be active in focal adhesion. Is expressed in heart. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human NEBL (nebulette).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_07196152_07199384.mRNA True 876 mRNA 0.51 7 7196152 7199414

Neighbor

gene id symbol gene type direction distance location
CI01000004_07164273_07167923 BMI1B, BMI1 coding upstream 27916 7164273 ~ 7168236 (+)
CI01000004_07084569_07087489 KLHL40A coding upstream 108054 7084379 ~ 7088098 (+)
CI01000004_07075959_07081717 HHATL, HHATLA coding upstream 114311 7074308 ~ 7081841 (+)
CI01000004_07043037_07053182 PLCD1B coding upstream 142411 7042393 ~ 7053741 (+)
CI01000004_06989955_07000066 NA coding upstream 195919 6989562 ~ 7000233 (+)
CI01000004_07249855_07250697 NRN1B coding downstream 50177 7249591 ~ 7251433 (+)
CI01000004_07254370_07254880 LYRM4 coding downstream 54956 7254370 ~ 7255602 (+)
CI01000004_07262498_07264843 RPP40 coding downstream 62859 7262273 ~ 7265593 (+)
CI01000004_07306344_07318193 OXSR1B, OXSR1, OXSR1A coding downstream 106843 7306257 ~ 7318449 (+)
CI01000004_07319769_07320274 NA coding downstream 119742 7319156 ~ 7320711 (+)
G28606 NA non-coding upstream 500 7195049 ~ 7195652 (+)
G28405 NA non-coding upstream 45665 7149337 ~ 7150487 (+)
G28583 NA non-coding upstream 57922 7137566 ~ 7138230 (+)
G28598 NA non-coding upstream 58992 7136504 ~ 7137160 (+)
G28596 NA non-coding upstream 61209 7134743 ~ 7134943 (+)
G28634 NA non-coding downstream 49134 7248548 ~ 7248777 (+)
G28406 NA non-coding downstream 90227 7289641 ~ 7295398 (+)
G28647 NA non-coding downstream 97678 7297092 ~ 7297341 (+)
G28651 NA non-coding downstream 102311 7301725 ~ 7301988 (+)
CI01000004_06571261_06572539 SEP15 other upstream 621731 6570771 ~ 6572667 (+)
G28302 NA other upstream 694065 6470028 ~ 6502087 (+)
G28165 NA other upstream 1463151 5732589 ~ 5733001 (+)
G27805 NA other upstream 1822349 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 3643706 3550329 ~ 3553423 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 455358 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 1234291 8414316 ~ 8439933 (+)
G28859 NA other downstream 1399821 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 1777024 8976254 ~ 8980984 (+)
G30797 NA other downstream 3297962 10497376 ~ 10497788 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016310 nebl coding NC_007113.7 CM002886.2 21076585 ~ 21082695 (-)