CI01000004_07075959_07081717 (HHATL, HHATLA)


Basic Information

Item Value
gene id CI01000004_07075959_07081717
gene name HHATL, HHATLA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7074308 ~ 7081841 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_07075959_07081717.mRNA
CTATAAATGAGACAACGTGTGGGCGTTTGGAGCTGTGCAGCATCATTTACATCTGAAAGAACTTTATATTTGTGTGTAGCCTATATTAATAGTCTACACAGATACTCTGATTTTAATTGAACAGGTGCACGCATGCTTTCGTGATTGATTAAATGTTAAAATAAAAGAAATTGCCTGCCGGGAGCGCTCATTTGGGAGTTCAGTCCTTGGTTTTTCATACTCTTGAAGGATCCCCTGATGTGTGGGAGATCGCATTGCGCTGCAGCTGCCGCACTGTACCATGAGCAACTGCTCAGGCTAAAATAGGAAGAGGTTGTACGGCGCAGCTGACTGTGCTGTTTCTGAGGAGCCGTGAAAACAGGCACTCCCATTTAAGTCACTGACTTACAGTCTTCTGAGAATTAGACTGGGTGTCAAATAAGTGCGAAAAATGTTTTTGTTGTTTAATTCGTTTTACTGACTGGCTAGGAGAAGTTTTGGTGTTAACGTATAATGCGCAAAATAATATGCCTCCTTTATAGGCTATTAATTCTTGATGAGCATTGTGTGTGTGAACTTTTACTGATATGGTAATTAGTGAGGAGTGTCTATCCTGCTAAAATGTAAATTGCATTTACTTTTAGCTACTGTTGGCACTTGGCCACAGGGTTTACAATATAACGTTAATAAACATACTGTAACGAATAAACTATGAAAGTATATTAACGAAGCTATATTAAAAATATATTAACATTTAAAAGGCTCATATGAAATAGGCCTAAAGTTTAATAAGTTTTGTTGTACCATTTGCACTAATGCTTTGAAGCATTACAAATCACCGCTCCTTTATAAATTGGACTTTAAAACTAGTTCTGCAAGTAAAACTTGATTATGGGTGTCAAAACCCGAAATCAAATGTCATGTTTCATGACAGCGTCACTGTGGCAGTTGTAGTGAACGGGAATTATAATTATCACAATTATTTAAAAACATCTTTCATTAAATTGTGCTATTTTGATTCCTACCGCTTTCTTATATTTATCTTCTGAACCGTAAATCTTTTTTCACTCCAACTGCAAATTTGTTACTTCATTAATATTAATAGTCACGTCACAAAGCTCTCCTGTGATTGGACAGATATTTGCCCGCTGATATTATTAGGTGACAATTTAACCGCCTTCTCCTATCGCTTCACAGTATATGCGAAGTATTTTTATTGTCTTACGGTTTTAGAGCTAAACTTTTGCACTAAACTCAAATATACTTTTCTATATACGAAAAGTATTAATAGTGTCCTTTTGACCTGGTTGTAAAATACCTGAAAGAAGAGAAGAATCTGTGGATAACTGAGGAGTGAGTGTGAGTGACGTTTGACCTGTAACGGCCGTTAGTGAGTATGACAGCGGAGCTAATAAAATACTGTATAATACGAACAAATAATCAAATAAAAACGAAATACGATTCGACATCATAATTAATAATTGGTTTATGAAAATTTCACACGACAAACGATAAAAACATTCTTAACAAACTTGTGGGGGTAGTATGTATCTATAAGTTTCAATTGTATTTAACGTTACCGTATCTATTTTCTGCTGTGGTCGTTGGATAATTTTATTATGAGTGTAACGTTAATTAGATTTTAATGTTAAGACTTCTCTTCAGGTTAACCATGGGGATCAAGACAGCCCTTCCCAAGATTGAGCTGTACATGTACACTGCTGTCGTCTCTCTTGCACTCTTATGGGCAGGGAGCTGGATCATTGAGGCCTCCAGTGGTACACTTTATTTTTATCTCTTGCTTTTTCTTGCTTCATTAAGATCACAGAATTATAGTCATGTCTATCATGGATGCACTAGAACACCACGAGTAAAGGATGTTTCAGATTTTGAATGGGTTATGTGGTTTACCACTTTCCGCAACCATATCCTGTTTGCCCTCTCCGGTCATGTGATCTTTGCTAAGATCTGCTCGATGTTGTCTCCAAAGAACAGATCTTTGATCTATATGGTGTATGGATCTCTAGCTGTCCTGATTACTATGGGATGGACATACATCTCTCTCGTCCTGTCTCACTGCATCATCCTCTACAGTGTGGCCCTCGTCAAGAGGAAGTGGCTCTGCTTTGTGGCTGGACTTACCAGCCTGGCAACTTTTAAGATGGAGCCCTTTAATACTTGGCAGGAAGGCTTTGCGACTGGCTCCTTTGATCTGCAAGACGTCTTGTTCTACGGAGGCTGTGGCTTCTCCATTATGCGCTGTATGAGCTTTGCTCTAGAGAACTGTGAGAAGAAAGACGGTAACTACAGTTTCTTGGATCTGATCAAGTACAACTTCTACCTCCCCTTCTTCTTCTTTGGACCTGTCATGACCTTTGATCGTTTCCATGAGCAGGCTAACAACCCTAACTTGACTCGTAAAGAAAGAGAGATGTGGAACATCACCGTTCATGCTGTGGTGCACCTTGGGGCTATTTTGGTGGTGGATGTCTTCTTCCATTTCTTGTACATTTTGACCATCCCTGGCGATTTGAAGCTTTTGAAGCAACTGTCTGACTGGTCTCTGGCTGGTTTGGCATACTCTAATCTGGTGTATGACTGGGTGAAAGCAGCCGTCATGTTTGGTGTCATTAACACAGTATCCAGACTGGACCATCTTGACCCCCCTCAGCCTCCTAAATGCATCACAATGCTCTATGTCTTCGCTGAAACATATGTCTATGACTATATCGGAGAAAACCATGATGCTATCTTCAAGGAGCTTCTTGCAACCATCAGCACCTTTGCTGTCACAACTCTGTGGCTTGGACCCTGTGAGATTGTTTACATCTGGTCTTTCTTTAACTGCTTTGGCCTAAACTTTGAACTTTGGGTGGCTAAGTTCTTTTCTCTGCCACCATTTTCCACCATTGAGCGGAATCTTATGTCCGAGGCGATGTCACGTCGAATCAGGGGCTTGTTCAACGCTGTTAACTTCTGGCAAATTATCCTGTACAATGTCCTGGCGCTGAACAGTCTGGATTTTGCTCAGCTGGTTGCTAAGAGACTGCTTCTTAAAGGCTTCCCCTTGTCCACTCTCTCGGTGCTGTTTGTGACTTACTGTGGTGTGCAGCTGATAAAGGAGAGAGAGCGAAAGCAGGCCCTACTGGATGATCCGGAACCAGTGCCACCCCCAGAGGCGGGCAAACAGAAGGCCGAGTAAAGGACAGAGAGGTCATTGAATCCAATCCAGCTCTTGAGGTCCCTCTTGTTAATTCTGCCCCTGAGCTTTCATGCCAGACTGAAGCAGTCCCATCACTATGGTCACTGCTTTGCACAAGTCTGTT

Function

symbol description
hhatla Predicted to enable acyltransferase activity. Predicted to be involved in negative regulation of N-terminal protein palmitoylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in cephalic musculature; hypaxial myotome region; myotome; pectoral fin musculature; and somite. Orthologous to human HHATL (hedgehog acyltransferase like).
hhatl Predicted to enable acyltransferase activity. Predicted to be involved in negative regulation of N-terminal protein palmitoylation. Located in perinuclear region of cytoplasm.

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_07075959_07081717.mRNA True 3305 mRNA 0.41 9 7074308 7081841

Neighbor

gene id symbol gene type direction distance location
CI01000004_07043037_07053182 PLCD1B coding upstream 20567 7042393 ~ 7053741 (+)
CI01000004_06989955_07000066 NA coding upstream 74075 6989562 ~ 7000233 (+)
CI01000004_06973330_06975283 NA coding upstream 98493 6972779 ~ 6975815 (+)
CI01000004_06957791_06959694 RALAB, RALAA, RALB, RALA, RALBA coding upstream 114418 6956014 ~ 6959890 (+)
CI01000004_06952094_06953401 NA coding upstream 120759 6951852 ~ 6953549 (+)
CI01000004_07084569_07087489 KLHL40A coding downstream 2538 7084379 ~ 7088098 (+)
CI01000004_07164273_07167923 BMI1B, BMI1 coding downstream 82432 7164273 ~ 7168236 (+)
CI01000004_07196152_07199384 NEBL coding downstream 114311 7196152 ~ 7199414 (+)
CI01000004_07249855_07250697 NRN1B coding downstream 167750 7249591 ~ 7251433 (+)
CI01000004_07254370_07254880 LYRM4 coding downstream 172529 7254370 ~ 7255602 (+)
G28565 NA non-coding upstream 19291 7054585 ~ 7055017 (+)
G28548 NA non-coding upstream 102174 6971358 ~ 6972134 (+)
G28536 NA non-coding upstream 160368 6913645 ~ 6913940 (+)
G28535 NA non-coding upstream 161420 6912617 ~ 6912888 (+)
G28516 NA non-coding upstream 308904 6749079 ~ 6765404 (+)
G28574 NA non-coding downstream 16633 7098474 ~ 7098920 (+)
G28595 NA non-coding downstream 52634 7134475 ~ 7134688 (+)
G28596 NA non-coding downstream 52902 7134743 ~ 7134943 (+)
G28598 NA non-coding downstream 54663 7136504 ~ 7137160 (+)
G28583 NA non-coding downstream 55725 7137566 ~ 7138230 (+)
CI01000004_06571261_06572539 SEP15 other upstream 499887 6570771 ~ 6572667 (+)
G28302 NA other upstream 572221 6470028 ~ 6502087 (+)
G28165 NA other upstream 1341307 5732589 ~ 5733001 (+)
G27805 NA other upstream 1700505 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 3521862 3550329 ~ 3553423 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 572931 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 1351864 8414316 ~ 8439933 (+)
G28859 NA other downstream 1517394 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 1894597 8976254 ~ 8980984 (+)
G30797 NA other downstream 3415535 10497376 ~ 10497788 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016315 klhl40a coding NC_007113.7 CM002886.2 21326957 ~ 21352101 (-)
bowfin (Amia calva) AMCG00019147 hhatla,hhatl,LOC107718176,LOC107688529,LOC107722653,LOC107689424 coding CM030124.1 CM030124.1 5549593 ~ 5563655 (+)