G28516


Basic Information

Item Value
gene id G28516
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6749079 ~ 6765404 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32243
AGTCTTTTCAATGTAAAAGTCTTCGCTACTGACTGACACACTTATAAAGACAGTCTTTGCCGCCATCTAATGGCGTAATAATGCAACTTCTGTTGCTGTTCACGGTCAGGGACTATTTTTTCCAGCGGAAGGAAGGCTTTAGTGAAAGTTTACTTCATGAAAGTTGCATTGATACATATTTTTGGCTTTAATATTTGTATTGTGTGGTAACCGTTTTATAAAAGCAATAAGGTACTCGAGGCTAGTGCTGTATTGTGAATAAGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32243 True 266 lncRNA 0.37 2 6749079 6765404

Neighbor

gene id symbol gene type direction distance location
CI01000004_06651958_06654716 CYP7A1 coding upstream 94151 6651869 ~ 6654928 (+)
CI01000004_06637295_06650428 NA coding upstream 98254 6637080 ~ 6650825 (+)
CI01000004_06624281_06625474 FAM110B coding upstream 122646 6623037 ~ 6626433 (+)
CI01000004_06571261_06572539 SEP15 coding upstream 176412 6570771 ~ 6572667 (+)
CI01000004_06503758_06508636 GTF2B, GTF2B.L, TF2B coding upstream 240136 6503445 ~ 6508943 (+)
CI01000004_06833827_06840024 RAB2A coding downstream 68423 6833827 ~ 6840399 (+)
CI01000004_06860789_06892941 CHD7 coding downstream 95385 6860789 ~ 6893505 (+)
CI01000004_06952094_06953401 NA coding downstream 186448 6951852 ~ 6953549 (+)
CI01000004_06957791_06959694 RALAB, RALAA, RALB, RALA, RALBA coding downstream 190610 6956014 ~ 6959890 (+)
CI01000004_06973330_06975283 NA coding downstream 207375 6972779 ~ 6975815 (+)
G28515 NA non-coding upstream 2853 6746024 ~ 6746226 (+)
G28381 NA non-coding upstream 8482 6723013 ~ 6740597 (+)
G28369 NA non-coding upstream 67427 6674839 ~ 6681652 (+)
G28486 NA non-coding upstream 74605 6674239 ~ 6674474 (+)
G28535 NA non-coding downstream 147213 6912617 ~ 6912888 (+)
G28536 NA non-coding downstream 148241 6913645 ~ 6913940 (+)
G28548 NA non-coding downstream 205954 6971358 ~ 6972134 (+)
G28565 NA non-coding downstream 289181 7054585 ~ 7055017 (+)
G28574 NA non-coding downstream 333070 7098474 ~ 7098920 (+)
G28302 NA other upstream 246992 6470028 ~ 6502087 (+)
G28165 NA other upstream 1016078 5732589 ~ 5733001 (+)
G27805 NA other upstream 1375276 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 3196633 3550329 ~ 3553423 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 889368 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 1668301 8414316 ~ 8439933 (+)
G28859 NA other downstream 1833831 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 2211034 8976254 ~ 8980984 (+)
G30797 NA other downstream 3731972 10497376 ~ 10497788 (+)

Expression


Co-expression Network