CI01000004_06860789_06892941 (CHD7)


Basic Information

Item Value
gene id CI01000004_06860789_06892941
gene name CHD7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6860789 ~ 6893505 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06860789_06892941.mRNA
ATGGCTGACCCAGGCATGATGAACCTCTTCGGAGACGATGGGAATCTGTTCTCTGATGAGTTGGAGGGCCTGGGGGACTGTGGCTACCCCCAAGGTCAGGCAAATCCCATGAGTCAACAGATGCCCCATGAGCACCAAGGCTACGGGCAGCTCCCCTCTTCTCTTCACCTCTCCTCACCTGCTGTTCCTGGACAGGCCAAGCTTGGCCACCATTTTGACCACTTTAATCAGTATGAGCAGCCCAAAATGCATCCAATGGACCAGCAGGGGGGCCGGATGATAGGGAATGGACCAGTAAATGGCATGTCCTCCCCTCATTCCCGCTATCATGGTGCTCCGCCAGGTGCGGGAGGGACTGCAGGGCATCATGTTTACCCAGGAGATGGGCGGAGCCAATCATTCCCAGATGGTGGAAATGTGTGGGGTGCTCAAGCAATGCAGGTGCCCGAACAAGCTCGGCCATCTTTCCAGCAGCAGCCTCCACAAGCCTCTTCTCATCAGCATGGCCCTTCCGGACCACAAGGACACGCCCACCAAATGGGCCCTTTTATCGGCCGCGGTGACTATGCCATGCAGGGTCACAACCAGACCCAAACACCTCCTAGAATGAACCACTTTCCACAAGGCCTCCCTCAGGAAGCCAATCATTTCATGGGGCACGTGGGGATGACTCAGAATCCCAGCATGTCGGGACCCCCCATGCGTCACCCGGCACAGCCTAGTCAGCAACCCAATCAGCAGTTTCTCCACAGACCCGGCCAGGGTCCGGTTCATCCGGAGTCCGTCGCCAGCCATAACCCCCAGTTCCCACAAAGCCCTTCACGACAGCAGCAGCAACAGCAGCAGGTCATGGGTGGAAGATCCCACCAAAACATGGGGTTTAACATGCACAACCAGCAAGTCCCTTCCAACACTGTAAACAGCTCAGGGCAGTACCCTCCCTATCCTTCGTACGGCAACCTTAATCAGGGATTAGCCAACACTTCAGGGATGAGTCCCAACTTGAGCCTTACCACCAGCAGCAACAGCAACCCTAATGCTCCTGTGACCCAGGTGCAACGCTACCCTGCCCCAACAGGGCCCCAGCGCTACCCCACACCTGGGGCTCAACAGGGACCAATGCACCAGCAGCCCATTCATGTGAACCAAATCAACACCCAGCCTATGCATCAAGCTCAGAACCAGTCTACAGCCCAGCAGAAGCTGCAGCAACAGCATCTACCGACTCCACCTCAGGGATCATACGCCTCCCCTCCTTCCATGTCGCCCATGAGGAACCTGGCTACCCCTGCAGGCACTCCACCGCCCCAGCAGGGCCGGCCACCCAGTGCTGGTTTGGGAACTGATGTTGGCAGCTACCCTAGTGTGCCACATCAATCTCAAGGCCCAATGGCTCACATTCAGAGAGGAGCCTGCCCAATGAATGCAGCACAGCAGCATCCCCACCAACAGCTGCCATCACATCCCTCGCATCCACATCCTCCTCCAACCCAGATGTATGCTGCTTTGTCACCCAATCACAGGGCCACAAGCGCTCAAGGAAGACCTCCAGCAGGACTGGGTGCAAACCACACAGAGCCGCTGGGCCCGCAGGACCAGAGGCTGCTTGCTCAAGCACAGCGCCAGCAGCTGCAGACGCCCCCATTGCCTTTCCAGCAGCAACAGCTGCAGCAGGTGCACACCCCTCCCTCTATTCCTCCGTCACAGACACACCTGGGTGCACACCACCAGAACTCTCCTCCATCTCAGCAGGCATGGGCACCTCCTCACCAGTCGCCTCCACCCATGCAGAAAGTGCCTCACATGCAGCATTCTCCATCAGACCCTTCCCTGGAGATGATAACATCCAGTAAGGCACCTGCCTCGGGCCCAAACCTCCAACCAGCCAGCTGTGACATACAGCAGACAGAGAGCGAGCTCAAGCCAAAAAAGAAGAAAAAGAAGAAAGCCAAGGTAAGTGAAGGCCAGGAGGGTAACGACATCAGCGGTGAGGCTGGTGGAGAGGCAGCTGCTCTGATGAACGAGGGAGACAGTCTTATGACTCCCGTGGAACAGTCTGCTGTTGAAAAGAAGAGCAAAAAGAAGCCAAAGGAGAAGGAGCCCAAGGAACCGAAAGAGCCCAAGACTCCCAAAACCCCGAAGACTCCCAAGACACCCAAAGAACCCAAGGAACCTAAGGAGAAAAAAGTGAAGACTGCCACCCCGAAGCCTAAGAGCTCCAAAAAGCCCAGTGCAAAAAAATCTGACTTCGAGTCCAGTAACAGCACCAAGAAAGAGGCAAAGCGCAAGAGAGAGCCCTCTGTCACATCTGATGTGGAGAAAACGCCGCCACATTCACCAGAGGAGGAGGAAGATGATGGTGTTCAGGAGTTGCCAGATGCGGAGGGCCCTGTGGTGGAGAAGATCATGGGGATGCGCATTGGAAAGAAAGAGTTGTCATCTGGTGAAGAGGTGGAAGTTGAAGAGTTTTATGTCAAATTCAAAGGCTTCTCCTACCTGCATTGTCGCTGGGCAGACATCGAAGAGCTGGAGAAGGATAAGAGAATCCAGCAGAAGGTTAAGAGGTTCAAAGCCAAGCAAGCCCTCAGTAACTTCCTTAGTGAGATGGATGATGAGCCCTTCAACCCAGATTATGTGGAGGTGGACAGAGTTCTGGATGTGTCTGAAAGCACCGATGAAAATGGAGAGCCTGTAACTTTGTACCTGGTAAAGTGGTGCTCCTTACCCTACGAGGACAGCACGTGGGAGTTAAAAGCTGACATCGACCAAGGGAAGATTGAAGAGTTCGAGAGAGTGATGGCACGTGAGCCAGAGCCGAAGCGCGTGGAGCGACCTCCCACCAGTGACTGGCAGAAATCCGAGAGTTCCAGAGAATATAAAAACGGCAATGCGCTCAGGGAATACCAGCTGGAGGGAGTCAACTGGCTGCTCTTCAACTGGTACAACACACGAAACTGCATTTTAGCCGATGAAATGGGCCTTGGCAAAACAATCCAGTCCATCACATTCCTCTATGAGATATACCTGAAGGGAATCCACGGTCCTTTCTTGGTGATTGCACCTCTTTCCACCATTCCCAACTGGGAGAGGGAGTTCAGGACATGGACTGAGCTAAACGTAGTGGTCTATCATGGTAGCCAGGCTAGCCGAAAGACTATTCAGGCTTATGAGATGTACTACAGAGACACACAGGGTCGTGTAATAAAGGGAGCCTACAAATTCCATGCAATCATCACCACATTTGAGATGATACTGACGGACTGCCCCGAGCTACGGAGTGTGCCGTGGCGCTGTGTGATCATTGATGAGGCTCATAGACTCAAGAACAGGAACTGCAAGCTGCTTGAGGGCCTAAAGATGATGGACATGGAACACAAAGTCCTGCTGACTGGGACCCCACTGCAAAACACAGTGGAGGAGCTCTTCAGTCTCCTTAATTTTCTGGAGCCAGACAGGTTTCCTTCAGAGTCTACCTTCATGCAGGAGTTTGGAGATCTTAAAACAGAAGAGCAGGTGCAAAAGCTGCAGGGCATTCTGAAGCCCATGATGCTGCGCCGACTGAAGGAGGATGTAGAGAAGAATCTTGCTCCGAAAGAGGAGACCATCATTGAAGTGGAGCTGACCAATGTGCAGAAGAAATACTACCGTGCCATCTTGGAGAAGAACTTTGCCTTTCTGTCCAAGAGAGCTGAGGAGAAGATAATGGAGGAGTTCAGGGAGAGTCACCCCTTAGACCAACCGGAGTTCCACCTCCAGGCCATGATCCAGGCTGCAGGAAAACTGGTGCTGATCGACAAGCTGCTCCCCAAACTGAAGGCTGGGGGTCACCGTGTGCTCATCTTTTCCCAGATGGTGCGCTGTCTGGACATCCTGGAGGACTACCTCATCCAGAGACGGTATCCATATGAGCGTATAGATGGCAGAGTTCGAGGAAATCTCCGCCAGGCAGCTATTGACCGCTTCTCACGGCCAGACTCTGACCGTTTTGTGTTCCTGCTGTGCACCAGGGCTGGAGGCCTGGGTATTAACTTAACTGCAGCTGATACATGCATTATATTTGACTCTGACTGGAACCCTCAGAATGACTTACAGGCACAAGCCCGATGCCACAGGATAGGACAGAGCAAGGCTGTGAAGATTTACCGCCTGATCACCAGAAACTCTTATGAAAGAGAAATGTTTGACAAGGCCAGTTTGAAGTTAGGACTGGACAAGGCTGTGCTTCAGTCCATGAGCGGAAGGGAGAATGCTGCCAATGGGGTTCAGCAGCTCTCTAAAAAGGAGATTGAGGACCTCCTGCGTAAAGGGGCTTATGGAGCTCTAATGGATGAGGAGGACGAGGGATCCAAGTTTTGTGAAGAAGACATTGATCAGATTTTGCAGAGACGCACACAGACCATTACTATTGAATCAGAAGGCAAAGGCTCAACATTTGCTAAGGCAAGTTTTGTGGCCTCTGGGAACAGAACTGACATTTCTCTGGAGGACCCAGATTTCTGGCAGAAATGGGCAAAGAAAGCAGAGCTGGACCTGGATGTGATCAATGGCAGGAATAATCTGGTGATTGACACTCCTCGGGTCCGGAAGCAGACTCGTCACTACAGTTCTATGAAGGAGGATGATTTGATGGAGTATTCAGAGCTTGAGAGTGACTCTGAAGACAAGCCCATTCAGAAACCACGGAGGCCCCAGGACCGAACCCAGGGGTACCCCCGGAGTGAGTGCTTTAGAGTGGAGAAGAACCTGCTGGTGTATGGCTGGGGCCGCTGGGGTGACATCCTGTCCCATGGACGCTTTAAGCGTCCGCTGAGGGAGCGAGACGTAGAGACCATCTGCCGTGCCCTCCTGGCCTACTGCCTGCTCCACTACCGTGGAGACGAGAACATCAAGAGCTTCATTTGGGACCTCATCACCCCCACCGAGGACGGCCAGAGCCGCACACTGACCAACCACTCTGGACTGTCTGCTCCAGTGCCCCGGGGCCGTAAAGGGAAGAAGGGGAAGCCGCAGGCTGCTCAAACTCACATGCCACAGGCTGACTGGCTTGCTGACTGTAATCCTGACATCCTCCTTCAAGAGGATAGTTATAAGAGACACCTTAAACACCACTGCAACAACGAGTTGGATATCTGGATCCCACAACCTTTCCATGCCGACGTCCCCACTGATTGGTGGGATCTCGATGCTGACAAGTCCCTCCTCATCGGCGTCTTTAAGCATGGCTATGAGAAGTATAACTCTATGCGTGCTGACCCCACCCTGTGTTTCCTGGAGAGGGTGGGCATGCCTGATGCCAAGGCCATCGCTGCCGAGCAGAGGGGAGCGGACATGATGGCAGATGGTGTCGAGGGATGGACAAGGCGTGAAGAGGCTGATTTCTACCGCGTGGTGTCCACATTTGGTGTGGTTTATGACGTGCACAGACAGTGCTTTGACTGGTCCCAATTCCGTGCTTTTGCTCGTCTGGACAAGAAGACAGACGAGAGCCTGGAAAAATATTACTACTCTTTTGTGGCCATGTGTAAGCGGGTGTGCCGGATGCAGGTCAAAGCAGAGACAGAACTGCCAGACCCCACCCTCATCATTGACCCCATTACAGAGGAGCGGGCTTCACGGACGCTCTATCGTATCGAGCTGCTGCGGCGGATCAGGGAGCAGGTGTTGCCACACCCTCTGCTGGAGGAGAGGTTGAGTCTGTGCCAACCCAGCCCCGACCTTCCTGCCTGGTGGGAGCCCGGACGCCATGATCGAGACCTCCTGCGGGGTGCTGCAAAGCATGGTGTCAGTCGCACTGACTACCACATCCTCAACGACCCTGAGCTGAGCTTCTTGGAGGCCCATAAGAAGTTCACACAGGGCAAGGGTGCAGAACTGCCCATCATGTCTGATCCCCTCACCCCTCTGACCCTGCTCAAAGATGAGGATGTGAAGGAAGCACACGGAGATGTGATGCCCAAAGTGGAGAACGGTAACATAGAGGATGTCAAAGAAGAAAAATCTGAAGCCCTGTCTCCTAAAAAGGAAGTGAAGGAAGAAGAGGAAGCAAATGATTTGGGTCTTAAGCTTGAGCCCAAGGAGGAGAAGATGGAAGTGGAGGAAAAAGATGCAATGGAAGTTAAGACCAAGGAAGAGATGGGTTGTTCCGTGGATGGTATGGCTGTGGAGAAGCCCATGGATCATGAGTCCACAGACACACTTCCTACCCCTGAGAACAAAAATGCTCAGGATGAGAGAGCTTCTCCCTCAAAAACTGAGACTAAAGTACTCATTGACAAAATCTCTGAAGAAGACGAGGAAGAAAAGATGGATGAGGATGACAAATCAGAAAAATCTTCACAAGCTGAAGTTGGAGCCGCCTCTGAGAGGAAGAATTTTGATGAGGAGAGTAACGCCTCCTTGAGCACAGCCCGCGATGAGACCAGGGACTGCTTCAGTGTTGATGACGTTGAGCCATCAGCTTCTCAGATGTTCAGTGAACGCTCACTCTTCTCTTTCTGGCCCAAGGACAGGGTAATGATCAATCGTATGGACAACATCTGTGAAGCGGTCATGAAGGGCAAGTGGCCTTTCAACAGGAGGCAGTTCTTTGACTTCCCAGGCCTGTTGCCTGGCTACAGCTCCATGACAACGGACAGCCCCCTGCAGAGGCGGAGTCTTGGTGATCTCTCAATGGATGAAACTTTGAGCCTGTCAGTACCTCGGCAGCGCAGACGCAGAAGGAGGAAGGTGGAGATCGAGGCGGAGCGTGCTGCCAAGCGCAGGAACCTGATGGAGATGGTAGCCCAGCTACGAGAGTCCCATGCTGCAGAAGGCCAGGCACAGGCCATAGACCTGACCAAAGCGCTGCACAGTGTGTCCTCCTCTTCCTCCTCCTCTGCCTTCCCTGGAGCCATGGCCTCCTCTGCAGCCCTGAAAGCACAGATGGAGCTGCTGCAAGCAGGCGCTTCCTCCAGACCAAGGGCCAACGGCTCTCTACTTGACACTGAACTCCCCAACCGGAGAAAAAGAGGTCGCAGGAAAAATGTGGAGGGGTTGGAACTGCTCTTTATGGGGAACAAGAGAGGACAGCTGAATGTGAAAGCCCCTGGTGAAGGCCTAGAAGAGGGAAGCCATCTTCAAGGAGAAGATGGTCCCAGCACTAAGGACCTACGGGAATGGCTGAGACAGCACCCCACCTACACTATGGATGTGCCTGGATACGTACCAATGGGAGGAGCCATGGCCCCTCCAATGAAGGATTTACCACGCTGGCTGATTGAAAATCCAGAATTTGCCATCGCCCCAGACTGGACAGATATTGTGAAGCAATCGGGCTTTCTCCCAGAGTCCATGTTTGACCGTCTCCTGACTGGGCCTGTGGTCAGAGAGGAGGGCGTGCGCCGCAGAGGCAGACGTCCCAAATCTGAAATCGCCAAGGCGACGGCAGCAGCGCAGGCAGCGGCTGCAGCAGCAGCTTCCACATCCGGTGTTAATCCTTTACTGATGAACGGACTGTTTGGCAGTATGGACCTGACCAGTCTGCAGGGCCTGCAGAACCTCCAGAGCCTCCAGCTGGCAGCTGGCCTCATGGGCTTTCCCCCTGCTCTCGGAGGGGGAGCGGACGGCAAGCACGCCGCAGCCATGCTGCCTCTCATGCTTCCTGGCATGGGTGGCCTTCCCAACATGTTCAGTCTGGGGGGTCTATTTGGAGGAAACCTGGCTGCAGCTGCGACGGCGACCAATGGTGCGTCTGGTACAGAACAGGCTGAATCTGAGGAAAATCCCAACCTGAAGACGGATGAGGAGACCAAGGAGGAAGGAGATGAGAAAGAGAAGGAAGCCGAGAAACCAAGTGAAACAGAGTCTGCCGAGGCTACGGGGGCCGCCGGTGAGGACAAGGGGTCCAGCAAAGGGCCCGGCACAAATCAGGACCAGAATGCCTCTGCGGCTGATGTCGAAACTGCTGACAACACACTTGAAGACAGTGACTCAGAGGAGAGCCAGAACAAGACTGCTGATTCATCAGTACTAGATGATGACCTGGCAGGGCCGGTAGAGGAAATGGACTCCATGGAAGGTAAAGTTAACAGGAAAGCAAATAAGCTGTCTCTGTAACCATTAGCATAGCCAGGGATGACACGAACAGACATAGATTTGTGCGGATGTCAAAAGGGTTTTTTCCCCTGTATTTTTCTTTTTGTGTTTTTGTTGGGTTTTTTTGAAGTCTTTGGCACTGTGTGGGTGCCTTCTAGATGAGATGGAAATTTCCTGAAATATTATAGGAATTAATGGTTCCGATAGTGCTATGCTGCTCTCTCTTTATTTTAATATTATTTTGTTTTGTCTTTTTTTTTTTTTTTTTCTCTTTCTCTACTGTTGATATTGTAACAATGAGTAGCATCTCGTAATATTCAGTGGTGTACAATTTAACGGCATTAAGACACTCTCCGCTGCTGAAGAAGAATCGTGGTTCTCGTTGTACTGTTCTGCTGAGAGGAGCGGGCGAAGTTCTCACATATCATAGCCTACACTCGGACTGTTCCCAGTCTCTCACACTGACAATCCAAACGGGTGAGGAGACCTCTCAACCTGTGGAGACAGCAATAACGAAGGCAGCTTTTGAATGTTCGATTTTACTCTTTTGACTAAACACCGGAAAGTGTGAAAAAGCGACATGAA

Function

symbol description
chd7 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Involved in myelination and neuron development. Acts upstream of or within several processes, including animal organ development; nervous system development; and rRNA transcription. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; digestive system; gonad; musculature system; and somite. Used to study CHARGE syndrome. Human ortholog(s) of this gene implicated in CHARGE syndrome; hypogonadotropic hypogonadism 5 with or without anosmia; and idiopathic scoliosis. Orthologous to human CHD7 (chromodomain helicase DNA binding protein 7).

GO: NA

KEGG:

id description
K14437 CHD7; chromodomain-helicase-DNA-binding protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06860789_06892941.mRNA True 8658 mRNA 0.53 33 6860789 6893505

Neighbor

gene id symbol gene type direction distance location
CI01000004_06833827_06840024 RAB2A coding upstream 20390 6833827 ~ 6840399 (+)
CI01000004_06651958_06654716 CYP7A1 coding upstream 205861 6651869 ~ 6654928 (+)
CI01000004_06637295_06650428 NA coding upstream 209964 6637080 ~ 6650825 (+)
CI01000004_06624281_06625474 FAM110B coding upstream 234356 6623037 ~ 6626433 (+)
CI01000004_06571261_06572539 SEP15 coding upstream 288122 6570771 ~ 6572667 (+)
CI01000004_06952094_06953401 NA coding downstream 58347 6951852 ~ 6953549 (+)
CI01000004_06957791_06959694 RALAB, RALAA, RALB, RALA, RALBA coding downstream 62509 6956014 ~ 6959890 (+)
CI01000004_06973330_06975283 NA coding downstream 79274 6972779 ~ 6975815 (+)
CI01000004_06989955_07000066 NA coding downstream 96057 6989562 ~ 7000233 (+)
CI01000004_07043037_07053182 PLCD1B coding downstream 148888 7042393 ~ 7053741 (+)
G28516 NA non-coding upstream 95385 6749079 ~ 6765404 (+)
G28515 NA non-coding upstream 114563 6746024 ~ 6746226 (+)
G28381 NA non-coding upstream 120192 6723013 ~ 6740597 (+)
G28369 NA non-coding upstream 179137 6674839 ~ 6681652 (+)
G28486 NA non-coding upstream 186315 6674239 ~ 6674474 (+)
G28535 NA non-coding downstream 19112 6912617 ~ 6912888 (+)
G28536 NA non-coding downstream 20140 6913645 ~ 6913940 (+)
G28548 NA non-coding downstream 77853 6971358 ~ 6972134 (+)
G28565 NA non-coding downstream 161080 7054585 ~ 7055017 (+)
G28574 NA non-coding downstream 204969 7098474 ~ 7098920 (+)
G28302 NA other upstream 358702 6470028 ~ 6502087 (+)
G28165 NA other upstream 1127788 5732589 ~ 5733001 (+)
G27805 NA other upstream 1486986 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 3308343 3550329 ~ 3553423 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 761267 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 1540200 8414316 ~ 8439933 (+)
G28859 NA other downstream 1705730 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 2082933 8976254 ~ 8980984 (+)
G30797 NA other downstream 3603871 10497376 ~ 10497788 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019393 chd7,LOC107585562,LOC107688517,LOC107718105,LOC107589837,LOC106568873 coding CM030124.1 CM030124.1 18257809 ~ 18296221 (+)