CI01000004_06651958_06654716 (CYP7A1)


Basic Information

Item Value
gene id CI01000004_06651958_06654716
gene name CYP7A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6651869 ~ 6654928 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06651958_06654716.mRNA
ATATAAAAACAGTTCTAAGAGTGTATGAGTGCATCTTTAAGGATTACAGCCACACTCTAGTTCCACCAGGTTTTGTCTCCCCAGCAGTCATGATCCTAAGCATTGCCCTCATTTGGGCCATAGTAGTTGGGCTCTGTTGTTGTCTTTGGCTTATCACAGGAATACGCAGAAGACAGCCTGGGGAGCCTCCAGTAGAAAATGGATGGATCCCTTACCTTGGCTGTGCTCTTCAGTTTGGCGCAAACCCTTTGGAGTTTCTTCGCAGCAGACAGAAGAAATATGGTCACATTTTTACATGCAAAATTGCTGGGCAGTATGTCCATTTCCTTTGTGATCCATTCTCCTACCATGCCGTCATCCGCCAAGGAAGGCATCTTGACTGGAAGAAATTTCACTTTGATGCCTCTGCAAAGGCATTTGGTCATGAGAGCATGGATCCCAGCCATGGTTACACCACTGAAAATCTGCATCAGACATTCCTAAAGACTCTGCAAGGAGATGCCTTGTCTTCTCTTATTGAGACCATGATGGAAAACCTTCAGAGCACCATGCTGCAGTCAGGCATGCTGAAGGCTGAAACTTCCAAGTGGCAGAGCGATGGTATTTTTGCCTTCTGCTACAAGGTCATGTTTGAAGCAGGCTACCTGACCCTCTTTGGAAAAGAATTGGATGGGGACCAGAGCATTGCACGCCTGCAAGCCCAAAAAGCTCTGGTGCTCAATGCTCTGGAGAACTTTAAAGAATTTGATAAGATCTTTCCTGCTCTGATCGCTGGCCTCCCCATTCACGTTTTTAAGAGTGCCTACAGTGCTCGCGAGAACCTCGCCAAGACTATGCTCCACGAGAACCTCAGCAAACGTACCAATGTGTCTGACCTCGTATCCTTGCGCATGCTCTTGAATGACACATTATCTACCTTCAATGAGCTGAGCAAAGCCAGGACCCATGTGGCCATACTGTGGGCTTCACAAGCCAACACTTTGCCTGCAACCTTCTGGACCCTGTTCTATATGATCAGGTGCCCTGCGGCCATGAAAGCTGCTAGCGAGGAAGTAAGGCGAACGTTTGAAAGTTCTTATCAGAAAATCGATCCAACGAATTCTCGACTTGTACTAACAAGGGAACAGTTGGACAACATGCCAGTTCTAGACAGTATCATTAAAGAGGCGATGAGACTGTCCAGCGCGTCCCTGAATGTGAGAATGGCCAAGAGCGATTTCCTTCTTCACCTGGACAACAAAGAGTCTTACCACATCCGCAAAGATGATGTAATTGCTCTGTACCCTCCGATGATCCACTTTGATCCTGAGATCTATGACAATCCTCTGGCATACAAGTATGATAGATACCTTGACGGGAATGGGCAGGAGAAGACCAGCTTTTACAGAAATGGACGCAAACTTCGTTACTACTACATGCCCTTCGGCTCTGGGGTGACCAAGTGTCCGGGCCGTTTCTTTGCTGTGCACGAGATTAAGCAGTTTCTGTCTCTTTTACTAGCGTACTTTGAGATGGAACTTTTGGACTCTGATGTGAAAGAACCACCGTTGGACCAGTCTCGTGCTGGACTGGGTGTTTTGCAGCCCACCTATGATGTTGACTTTCGATATAGACTCAAATCTCACTAAGGATCTCGCACTTATTTATTGACTGTTGACTTAAACTGTAAATAATGTATATTTTGCGTCATGTCCAAGTAGACAAATGTGTTCTTTCTATTCAACTTGATTAGAGAGAGATTTTAGGAAGTTTGAAAGGAACTTTAGAGCTCTCCTTTTAAAATTTTCAGTAACATTTACTGCACTTGTGCTATGTGTATTCATAGTATTCTTCTCAGTTA

Function

symbol description
cyp7a1 Predicted to enable steroid hydroxylase activity. Predicted to be involved in bile acid biosynthetic process and cholesterol homeostasis. Predicted to act upstream of or within cellular response to glucose stimulus and cholesterol catabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region; central nervous system; otic vesicle; and retinal ganglion cell layer. Orthologous to human CYP7A1 (cytochrome P450 family 7 subfamily A member 1).

NR:

description
Zgc:63920

GO:

id name namespace
GO:0004497 monooxygenase activity molecular_function

KEGG:

id description
K00489 CYP7A1; cholesterol 7alpha-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06651958_06654716.mRNA True 1840 mRNA 0.45 6 6651869 6654928

Neighbor

gene id symbol gene type direction distance location
CI01000004_06637295_06650428 NA coding upstream 1044 6637080 ~ 6650825 (+)
CI01000004_06624281_06625474 FAM110B coding upstream 25436 6623037 ~ 6626433 (+)
CI01000004_06571261_06572539 SEP15 coding upstream 79202 6570771 ~ 6572667 (+)
CI01000004_06503758_06508636 GTF2B, GTF2B.L, TF2B coding upstream 142926 6503445 ~ 6508943 (+)
CI01000004_06487045_06494732 NA coding upstream 156325 6487045 ~ 6495544 (+)
CI01000004_06833827_06840024 RAB2A coding downstream 178899 6833827 ~ 6840399 (+)
CI01000004_06860789_06892941 CHD7 coding downstream 205861 6860789 ~ 6893505 (+)
CI01000004_06952094_06953401 NA coding downstream 296924 6951852 ~ 6953549 (+)
CI01000004_06957791_06959694 RALAB, RALAA, RALB, RALA, RALBA coding downstream 301086 6956014 ~ 6959890 (+)
CI01000004_06973330_06975283 NA coding downstream 317851 6972779 ~ 6975815 (+)
G28476 NA non-coding upstream 6590 6645009 ~ 6645279 (+)
G28474 NA non-coding upstream 8528 6643085 ~ 6643341 (+)
G28471 NA non-coding upstream 13189 6638371 ~ 6638680 (+)
G28421 NA non-coding upstream 51495 6587882 ~ 6600374 (+)
G28486 NA non-coding downstream 19311 6674239 ~ 6674474 (+)
G28369 NA non-coding downstream 19911 6674839 ~ 6681652 (+)
G28381 NA non-coding downstream 68085 6723013 ~ 6740597 (+)
G28515 NA non-coding downstream 91096 6746024 ~ 6746226 (+)
G28516 NA non-coding downstream 94151 6749079 ~ 6765404 (+)
G28302 NA other upstream 149782 6470028 ~ 6502087 (+)
G28165 NA other upstream 918868 5732589 ~ 5733001 (+)
G27805 NA other upstream 1278066 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 3099423 3550329 ~ 3553423 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 999844 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 1778777 8414316 ~ 8439933 (+)
G28859 NA other downstream 1944307 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 2321510 8976254 ~ 8980984 (+)
G30797 NA other downstream 3842448 10497376 ~ 10497788 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016324 cyp7a1 coding NC_007113.7 CM002886.2 22150134 ~ 22152797 (-)