G28486


Basic Information

Item Value
gene id G28486
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6674239 ~ 6674474 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32213
CATTGAGCAAGTAAAGGGTGTGGTTTCAGGGGGGAGGATTTCTGTCTTTCGGTCTTTGTTTTGGATGAAGTGATAAGGATCAGTACAGGGTAACATTAGTCACCTATTGCACCATCTGGTCGCTCCACATTCATTGTTACCTTAGTAAATCAAATTGTTGCTCACAGAGACAATTTACCTGTCAAAAACAGGTTTACCTGGAAAATGAATCATCATTTAATGAAAAAAACAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32213 True 236 lncRNA 0.38 1 6674239 6674474

Neighbor

gene id symbol gene type direction distance location
CI01000004_06651958_06654716 CYP7A1 coding upstream 19311 6651869 ~ 6654928 (+)
CI01000004_06637295_06650428 NA coding upstream 23414 6637080 ~ 6650825 (+)
CI01000004_06624281_06625474 FAM110B coding upstream 47806 6623037 ~ 6626433 (+)
CI01000004_06571261_06572539 SEP15 coding upstream 101572 6570771 ~ 6572667 (+)
CI01000004_06503758_06508636 GTF2B, GTF2B.L, TF2B coding upstream 165296 6503445 ~ 6508943 (+)
CI01000004_06833827_06840024 RAB2A coding downstream 159353 6833827 ~ 6840399 (+)
CI01000004_06860789_06892941 CHD7 coding downstream 186315 6860789 ~ 6893505 (+)
CI01000004_06952094_06953401 NA coding downstream 277378 6951852 ~ 6953549 (+)
CI01000004_06957791_06959694 RALAB, RALAA, RALB, RALA, RALBA coding downstream 281540 6956014 ~ 6959890 (+)
CI01000004_06973330_06975283 NA coding downstream 298305 6972779 ~ 6975815 (+)
G28476 NA non-coding upstream 28960 6645009 ~ 6645279 (+)
G28474 NA non-coding upstream 30898 6643085 ~ 6643341 (+)
G28471 NA non-coding upstream 35559 6638371 ~ 6638680 (+)
G28421 NA non-coding upstream 73865 6587882 ~ 6600374 (+)
G28369 NA non-coding downstream 365 6674839 ~ 6681652 (+)
G28381 NA non-coding downstream 48539 6723013 ~ 6740597 (+)
G28515 NA non-coding downstream 71550 6746024 ~ 6746226 (+)
G28516 NA non-coding downstream 74605 6749079 ~ 6765404 (+)
G28535 NA non-coding downstream 238143 6912617 ~ 6912888 (+)
G28302 NA other upstream 172152 6470028 ~ 6502087 (+)
G28165 NA other upstream 941238 5732589 ~ 5733001 (+)
G27805 NA other upstream 1300436 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 3121793 3550329 ~ 3553423 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 980298 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 1759231 8414316 ~ 8439933 (+)
G28859 NA other downstream 1924761 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 2301964 8976254 ~ 8980984 (+)
G30797 NA other downstream 3822902 10497376 ~ 10497788 (+)

Expression


Co-expression Network