CI01000004_06952094_06953401


Basic Information

Item Value
gene id CI01000004_06952094_06953401
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6951852 ~ 6953549 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06952094_06953401.mRNA
ATTTAAAAAGCAAAATTCTTTGGTAGATAGATTACCTGGGAGATCTTGTGTATTTCCTTGCCATTTTTTGTAATCATACAAAAATCCAGAAAATTATAGATGATCTAACTGTAAATTTCTAAGTAAACTCTCTCTCTCTCTCTCTCATATATATATATATATATATATAGATAGATAGTCTAGCAGCTCTCATTATTTAAACCTTTTTCATTCTCGTTCTGTAGGAATAATGTTCAACAGCAATGGCTACTTACAACACGCTGCAGGACAGGATCAGAGTAGCCAAGGAACTGCTTGAGCAAGTGGACAAGATTTGCAGTCGACAAGGCCGTGAGGTTGAGGGACGTGCTAAACTGTGCAGTAAGCTTCGGGCTGAGCTCAAGTTCCTACAGAAGGTGGAGGCCGGCAAGGTTGTGATCAAGGAGTCTCACCTGCAAAGTACCAATCTCACTCATCTGAGGGCCATCGTTGAGTCAGCCGAGAATCTAGAAAACGTGGTGAGCGTCCTGCACGTGTTCACCTATGAGGGACCTGATGGACAGAAGCAGACTTTGGTAGTCGACGTGGTGGCAAACGGAGGACACACTTGGGTAAAAGCCATCGGGCGCAAGGCGGAAGCACTGCACAACATCTGGCAAGGCCGTGGCCAGTATGGGGATAAAAGCGTGATCCGGCAAGCAGAAGATTTCCTTGAGGCCAGTCAGCAGCAGCCTGTGCAGTACAGCAACCCTCATATTATATTTGCTTTCTACAATGGGGTTTCCAGCCCTATGGCAGACAAGCTCAAAGAGATGGGCATATCTGAAGAAGATGATGCTGATGACGACGACAGTGACGATACAGACCTCATGCACACCCGTGTTGATCGAGACACCATTGTGGCCAGCCTTGCCTTCCCCACTGAGGTGAAGGTAGATGTGTGCAACAGGGTGAACCTTGACATCACCACTCTGATCACTTACGTGTCCTCCCTCAGCCACGGCAACTGTCACTTCACTTTTAAAGAGGTGGTGCTGACAGAGCAGGCCGCACAGGAACGGCAAGAGAAGGTCTTGCCCCGACTGGAGGAGTTCATGAAGGGAAAAGAGCTGTTTGCTTGTCATTCTGCGGTTGAGGATTTCCGTGTGATCCTGGATACGTTAGGAGGCCCGGGAGAAAAGTCCCGAGCTGAGGAGCTGCTAGCCAGGCTCAAAGTGGTTCCGGACCAGCCATCTGAGCGAACCAACCGCTTAGTTACGAGCTCAAAAGTGAACCGTAGATCACTGATGATCTTTGGGACAGGGGACACGCTGCGGGCAATCACTATGACTGCGAATAGCGGATTCGTTCGCGCTGCTGCTAACCAGGGTGTGCGATACAGTGTGTTCATCCACCAACCTCGCGCACTCACTGAGGGGAAAGAATGGAGAGCGACTCCAATATGACTGATGAGCTGTTAAAGAAATATGTCAGCAATTAAAAAGGTTATTGCATAAGATATGAACAGATATATATGATATAAGAGATGGTTAGAGTATAATATGTCATGTTTAAATCCAGACACCTGTGTGAGGCACTACTGTATAGTCGCAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06952094_06953401.mRNA True 1572 mRNA 0.47 2 6951852 6953549

Neighbor

gene id symbol gene type direction distance location
CI01000004_06860789_06892941 CHD7 coding upstream 58347 6860789 ~ 6893505 (+)
CI01000004_06833827_06840024 RAB2A coding upstream 111453 6833827 ~ 6840399 (+)
CI01000004_06651958_06654716 CYP7A1 coding upstream 296924 6651869 ~ 6654928 (+)
CI01000004_06637295_06650428 NA coding upstream 301027 6637080 ~ 6650825 (+)
CI01000004_06624281_06625474 FAM110B coding upstream 325419 6623037 ~ 6626433 (+)
CI01000004_06957791_06959694 RALAB, RALAA, RALB, RALA, RALBA coding downstream 2465 6956014 ~ 6959890 (+)
CI01000004_06973330_06975283 NA coding downstream 19230 6972779 ~ 6975815 (+)
CI01000004_06989955_07000066 NA coding downstream 36013 6989562 ~ 7000233 (+)
CI01000004_07043037_07053182 PLCD1B coding downstream 88844 7042393 ~ 7053741 (+)
CI01000004_07075959_07081717 HHATL, HHATLA coding downstream 120759 7074308 ~ 7081841 (+)
G28536 NA non-coding upstream 37912 6913645 ~ 6913940 (+)
G28535 NA non-coding upstream 38964 6912617 ~ 6912888 (+)
G28516 NA non-coding upstream 186448 6749079 ~ 6765404 (+)
G28515 NA non-coding upstream 205626 6746024 ~ 6746226 (+)
G28381 NA non-coding upstream 211255 6723013 ~ 6740597 (+)
G28548 NA non-coding downstream 17809 6971358 ~ 6972134 (+)
G28565 NA non-coding downstream 101036 7054585 ~ 7055017 (+)
G28574 NA non-coding downstream 144925 7098474 ~ 7098920 (+)
G28595 NA non-coding downstream 180926 7134475 ~ 7134688 (+)
G28596 NA non-coding downstream 181194 7134743 ~ 7134943 (+)
CI01000004_06571261_06572539 SEP15 other upstream 377431 6570771 ~ 6572667 (+)
G28302 NA other upstream 449765 6470028 ~ 6502087 (+)
G28165 NA other upstream 1218851 5732589 ~ 5733001 (+)
G27805 NA other upstream 1578049 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 3399406 3550329 ~ 3553423 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 701223 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 1480156 8414316 ~ 8439933 (+)
G28859 NA other downstream 1645686 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 2022889 8976254 ~ 8980984 (+)
G30797 NA other downstream 3543827 10497376 ~ 10497788 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016321 C2H7orf25 coding NC_007113.7 CM002886.2 21620177 ~ 21625493 (-)