CI01000004_06487045_06494732


Basic Information

Item Value
gene id CI01000004_06487045_06494732
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6487045 ~ 6495544 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06487045_06494732.mRNA
AAACGGTCCTTAGGACTCTTAGGAATGTCTGGTTTGAAGGAGAGTGCCAAAGTAGAGGAGAATGACACCTCAATGTCAAGAATCTCTCAGGACCTTTTGAACAGCGAGACATTCTCTGCAGAGGGGGCTACACCAGGACCATCAGCGCATTATCCTCAAGAGACCATGGCACTACTCGATGACCAAGGAGACCTCCTGACCAGTGTCGGTTTTATGGACTCCATTTGCTCAGATGGACCAGCCAAGGCTGCTTATGTCAATGGATCCACCTCACCCCATATATCAGATGAAATCTTGCTAGATATTTCAAAAAACGTACCAGTATTCCTTCCCAAATCATTACAAGCTCAGAATTCTGTCACAACCAACGTCCACTTTGAAGGCCCTGATCCACTCAGAAAAGAGGGGGAAATAACAATCAGGCAAACGTTGACTGCGGAGGATGTGGAGAATAGGGGCATATGGGGCTTTGATACAGAATCTCCAGAAAGTTCATTAGATAATTATGATGATGGAAATGACCTTAGCTGGAATCCCCAAAGGGAATTCATGAAGTTTCTGTGGGATGATGATAATGGACTTGAAATGGAGGAAAAACTTTCCCCAGTTCCTTCACCTATCAACCATAAAAGAAGAGTTCCATCACCACTCTGCCGTAAAAGAAGAAAACGTAAAGAAAAATTGGTGTTAAAAGTCGATCCTTCAGAGGACCTATACTCTGATTTGAATTTTGATTCAAAAAAAGATCATCCAGGTGAAGGAAGCCGGACAGAGTGCAGTCCTGTTAAGAGGAAACGTTCCCCAAGAAAACCATCCAAATTACAGTCACCCATTGTAAAACATACCAAGTATTTAAATGGAGCTGCTAAGGCAGTCAAACACCTGTTTCCCAAACCAGCCAAAAAACCTATTAGCAAGACACAAAAGATGGAATTGATTAGAGAAACTTTGCCATCAGACTCATGTTCTAGGGAGGAACCTTCTTTTTTTCAACGTAATAGCAGTTTTAAAGAGAAATCACAAGAAAACAGACAAATTACATGTAATAAAGATACAACTACTTCAAAGCCATTCATATGTAAGGAATGTGGGCAGTGTTATCATGATCATAGTTCAATGTTGCATCACATAAGTGTTCATCGGGACAAGCGACAGAAAATTATGGAAGAAAATAATGAGTTGCATCAAATTAAAGATGAAGGTAAAGATGCAAAGTTGCAATGCCCCCAATGTACCTTTGGAACGAACTGTCCGAACACCTTTGTGCAACATGCTAAGACCCATGAGAAGGACAAGCGGTACTATAGTTGTAACAAGTGTGATTTTGTTGAAATGAATGAAGTTGAACTGAGACGCCATTTGCTTCATAAACATGGCATCAGTGGTGCTGATCTGACTGTTTGGAAATCAGATGGATTTCAGGAGCGCAAAGTCAATAAATCAATATGCCCAAATTCCTACTCCTGTTCTGTTGAAAGAAAAACTAAAAACATAATTGGAAATCATGTTAAGGCTTCCTGTCAACCTCAGTTTAATGAAGAACAGGCATCCTCACATTCCCTTGACAGCAGTGATGAAGAACTATCACTGACTGAACAGCCGACTTCTGTTCTTTCATCATGTGCAAAACCAACAGCAAAGTCACCAAAATTGTCTGTGAAGCTCCGGGCACCAGACAAAAACGAGAGCTTGTCGTCTGATCAGAAGTGTGGTCTATCACGAAAGAAAAAAACATGGATGCACAAAAGTGTTCAAAGCCAATCAAGACTTGACAAATCAATTCACACGCTTTTATCTAGAAAGAAACGTAATGACCAGAGTGCCTCAGAATGCAACACTCATCAGGAGCCTGATGGAAGCAGTACAACAGAGTTTCTTCACAATAATGAGACCGCATTCTCTGGAACAGGAACTAGTTTGTCCCCCTCAAAGTGTCTGAAAAGATCAGCTCATTCTAAAGAAGGGAACACTAAAAGAACTTTTAAGTCTGATGGAAACGTTACTTGTTCAGAAGATGTTGGAAACACCAACTGTACGCATTTAAGTTTGGAAAAGCAAACACTGAAGAAGTCTCCTTCCAAAAGGAAAATGTCAACTCCATTCCACAATATGCAGGGCCAAGATATTCTTTTAGATTTCCCAAAATCTCGACAAAATTTCAAGAAAACTGAAACATCCAAGAGGAGAAAGGACTGTATTAACAATGGTGACTTTATGTGTGATTCTAATGATGATCTTGCACCTGAAGAATGTGAAATCAATAAGAATGCTAATGCGCGTTTTGTAAGAAAACAGACTTCGCCTGCAAAGGCAAGTCTTGTTGCCTCATCTAGTCACTTTGAGAGAAATCACGGTTCCCCGAGGAAGTTTTCCGTCAAAGACGAATACAAGGAAGAAGAGATCTCAGAGTCGAACTCCACTGTAAAGCGTGAACAGAGCTCAGATGTTGAGACAGATCTGAAGGCTTGTCCGTACTGTCCTGCTGTATTTGAGTCAGGAATTAGCCTCTCTAATCATATAAGAGGACATTTGCACAGAGTGGGCCTAAAAGTACGCCATGCTGTATCTGCAGCTAAGGTGACTTCTCCTGACAAAGTACCTCCAGTTCGACGACGAACATTGCAACAAATCAAAACAGGTGATGCTTCTCTTGTGCTTGATAGACTTTCTTACATCTATACAGAGTTTTTAGTTAACCAATTAAGGGAGTGGTTTGAAACAAGGACTGGGCTGTCCAATCATGTACGAGGCCACCTGAAGCGACTGGGCAAACCCACTTCCACCGCATCCAAATCTCCAGTGATCATATTGAAAGAATTGATGCGCGACAAGAAACAGTTTCAGATGAAGCTACAGGTTCTTGAGAAGAAGTGCCGTGCCACCAATTCTTTCCATCCTATTAGGTTGAATAATGGACTAACCTTCGCATCTACTGTCAAACGGCATAAAGATAAGGATGAAAAGAAAAAGATAGATATTAATAAAGGCTCACCACCAAGTGATCTGATTGGAATTTTGAAGAAAAGAAGAGCCCATGAAGAGACCAAAGCAAAGCACTCATCCCACACGGCAAGAAAGGCTCTCCATTTATCTTCAGGCAAAGACTGTGACCTGGAGATAGAACCTTTCAAAGCAGTGCCAAATTCACTAGCAGAGAAAAGTGAACTGAATAGAAAAGTTTGCGTGCACTGTAATGCCACCTTCCACAGTGGTGTTAGTCTCTCCAATCATTTGAGGGCATATGCACATAGAAAGAAAAAAGCTCTTCTGGATGGAACTACTTATGACTGTAAACAGAGAAAGCAAAGATCAAGGTCTGGATCAAAGAAGAAAACTTACCCGCTGCTGCACACTCCAGAGGAAATCTATACACTTACATGCAGGTTTTGTGATCTAGTCTTCCAGGGCCCTTTGTCAGTGCAGGAGGACTGGATAAAGCATTTACAGAGGCACATTATGAATACCGCTGTACCGCACACAGGGGCAGGGATGGTGGAAGTCACCTCCTTCCCCAAGGACTCTTGTTCCAACACCGTACCACAGGCACAACCTTCAGTGATGCAAACATCCTCATGAGCCCAGGAACACACACAAATTGTCCTTAGAATATCACTTGTGTGTAACTTGTTTGGTTATTTGGTTTAAATTTTATATTGCCATCAGTAAGGACTTCTGTTTTTAATCTTAATGACGATCCATTCTTATCACAGACGGCTTTTTAGATATTGTTACATTGTGCTGGTGTTGTACATGGTCAAAGAACGTACGAATGGTGGGTGGATATGTTGAGATTTCAGTGGAACCCACCACCAAAAGACAACCTTTACCTCAGATGCTTCTCACGTTGAGTTTAATCTGTCATCGCAGATTTATGCTCTACAAAAACTGAAATGATTCTGTATGTGGATTTTATAACAAGCCATTTTAATTTGAGAACCAACACAATTTTGTCTTTTTGTTGTCCCATCCATGAGCCTTGGAAGGTGCACATATGAGGCATATGTGTAAAAATGTAAGTCTATATATTTACTTGATTCAGAAGTTTAACTCATGCCAACACATCAGTCATTGTGTAAAACATCCTGTTCTATTGATATTTAGCGGTTCAGAAAGTATGCATGTCATAACTCCCGTTTACACCATTTCCGCTCCGGTAACATTTTGGTTTTCACTTATTACCCTGTTTTGATTTTATCTTAAATCTGTAAGTTTGCCATGTGTGCAAAAAAAAAAAAAAAAAAAAAAAACCACCAAAAAAAAGAAAAGAAAAACATTAACTGTTACTTGTGTAGGCCATTTTTTTACAGTTCAGATATTTTTGTGTATAAACCTTTTTAGGTAATTTATGTGAAAAATGTAAATCACTATAAACATTTTTGCTGTTCGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06487045_06494732.mRNA True 4388 mRNA 0.40 5 6487045 6495544

Neighbor

gene id symbol gene type direction distance location
CI01000004_06466871_06468477 NA coding upstream 18421 6466770 ~ 6468624 (+)
CI01000004_06463149_06463918 NA coding upstream 23039 6463149 ~ 6464006 (+)
CI01000004_06424864_06438552 STK25B, STK25, STK25A coding upstream 48373 6424584 ~ 6438672 (+)
CI01000004_06416971_06417931 THAP4 coding upstream 68901 6416582 ~ 6418144 (+)
CI01000004_06398828_06403391 AGXT, AGXTB coding upstream 83400 6398632 ~ 6403645 (+)
CI01000004_06503758_06508636 GTF2B, GTF2B.L, TF2B coding downstream 7901 6503445 ~ 6508943 (+)
CI01000004_06571261_06572539 SEP15 coding downstream 75227 6570771 ~ 6572667 (+)
CI01000004_06624281_06625474 FAM110B coding downstream 127493 6623037 ~ 6626433 (+)
CI01000004_06637295_06650428 NA coding downstream 141536 6637080 ~ 6650825 (+)
CI01000004_06651958_06654716 CYP7A1 coding downstream 156325 6651869 ~ 6654928 (+)
G28326 NA non-coding upstream 29764 6456898 ~ 6457281 (+)
G28325 NA non-coding upstream 30196 6456624 ~ 6456849 (+)
G28309 NA non-coding upstream 45543 6425355 ~ 6441502 (+)
G28308 NA non-coding upstream 72789 6413748 ~ 6414256 (+)
G28293 NA non-coding upstream 90825 6370266 ~ 6396220 (+)
G28440 NA non-coding downstream 79989 6575533 ~ 6576385 (+)
G28421 NA non-coding downstream 92338 6587882 ~ 6600374 (+)
G28471 NA non-coding downstream 142827 6638371 ~ 6638680 (+)
G28474 NA non-coding downstream 147541 6643085 ~ 6643341 (+)
G28476 NA non-coding downstream 149465 6645009 ~ 6645279 (+)
G28165 NA other upstream 754044 5732589 ~ 5733001 (+)
G27805 NA other upstream 1113242 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 2934599 3550329 ~ 3553423 (+)
G26245 NA other upstream 2964652 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 3728107 2745885 ~ 2769135 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 1159228 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 1938161 8414316 ~ 8439933 (+)
G28859 NA other downstream 2103691 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 2480894 8976254 ~ 8980984 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016333 znf644a coding NC_007113.7 CM002886.2 22506364 ~ 22530969 (-)