G28440


Basic Information

Item Value
gene id G28440
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6575533 ~ 6576385 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32167
GCACATCTTCCTGTTCACAGATTTACACAATGTGTTTACAGTCTTTTTTTATCATTATTATTGGTCCTAACAGTGTTAGTCATCAGCTAGTCACCAGTTAACAATGAAATTACAAGCACATTTTGATAGACTGGTCTTGGACAAATTGCTATGCCATTTCCAGAATGTGCCATGACATCTCTGTTTTTCAAAATCTGAACTTTAAAAATGACTCAACATCACAGTTCACAGAGTAACAGCACACCCTTGTGGAATGTAAGCTACTGATAGCGAGTGCTTGCTAATCTACTTTTTCCTGATTCCCACCTGCGTTGCTTTGTCCAGCTGTGCACACAATCTTACTGCATATGTAAAATGATTCTAAATGTTGAATAAACAGGGTTTGTTAAATCGTCAGGAATCTCACACAAACTCCATTCTAAAACTAACTAAATGCACAGCATAGCTTCATCTGTAAGGATCAGACTTATTGTAGCTACCCCTAATTCGAAAATATTTTAGAAACTTAACTGTTATCAAGTCCCACGAGCCACAAACACTGAACGTCATCGATGGTATGATGTACGTTGTCTGTCAATACGCTGTCTGTCACGAATTATCATTGCGTATGGGAAAATTGAACTTATTTTCACTCTCAGGATGAGTAAAAACATACTAGCCCTCCCGGGGTCCAGGGGCAGTAGTTGTGGCAGATCCCTTGCCAAGCACAGGACTGCAGACACTCCTCATCTCTGATGAATTCCATATGCGCTCCGCCTGCAGTTACTGCTTCTCTTGAACATCATAGCACATTTCTTCCATTACACCTCATTATCTACCCCTTTCATCCAAAATAATAACATATGCAAACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32167 True 853 lncRNA 0.40 1 6575533 6576385

Neighbor

gene id symbol gene type direction distance location
CI01000004_06571261_06572539 SEP15 coding upstream 2866 6570771 ~ 6572667 (+)
CI01000004_06503758_06508636 GTF2B, GTF2B.L, TF2B coding upstream 66590 6503445 ~ 6508943 (+)
CI01000004_06487045_06494732 NA coding upstream 79989 6487045 ~ 6495544 (+)
CI01000004_06466871_06468477 NA coding upstream 106909 6466770 ~ 6468624 (+)
CI01000004_06463149_06463918 NA coding upstream 111527 6463149 ~ 6464006 (+)
CI01000004_06624281_06625474 FAM110B coding downstream 46652 6623037 ~ 6626433 (+)
CI01000004_06637295_06650428 NA coding downstream 60695 6637080 ~ 6650825 (+)
CI01000004_06651958_06654716 CYP7A1 coding downstream 75484 6651869 ~ 6654928 (+)
CI01000004_06833827_06840024 RAB2A coding downstream 257442 6833827 ~ 6840399 (+)
CI01000004_06860789_06892941 CHD7 coding downstream 284404 6860789 ~ 6893505 (+)
G28326 NA non-coding upstream 118252 6456898 ~ 6457281 (+)
G28325 NA non-coding upstream 118684 6456624 ~ 6456849 (+)
G28309 NA non-coding upstream 134031 6425355 ~ 6441502 (+)
G28308 NA non-coding upstream 161277 6413748 ~ 6414256 (+)
G28293 NA non-coding upstream 179313 6370266 ~ 6396220 (+)
G28421 NA non-coding downstream 11497 6587882 ~ 6600374 (+)
G28471 NA non-coding downstream 61986 6638371 ~ 6638680 (+)
G28474 NA non-coding downstream 66700 6643085 ~ 6643341 (+)
G28476 NA non-coding downstream 68624 6645009 ~ 6645279 (+)
G28302 NA other upstream 73446 6470028 ~ 6502087 (+)
G28165 NA other upstream 842532 5732589 ~ 5733001 (+)
G27805 NA other upstream 1201730 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 3023087 3550329 ~ 3553423 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 1078387 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 1857320 8414316 ~ 8439933 (+)
G28859 NA other downstream 2022850 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 2400053 8976254 ~ 8980984 (+)
G30797 NA other downstream 3920991 10497376 ~ 10497788 (+)

Expression


Co-expression Network