G28309


Basic Information

Item Value
gene id G28309
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6425355 ~ 6441502 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32012
GTTTTTTTTTTTTTTTTTAATACAAAATTTTATTACAAGATGATAGACAATAATGGTTTAATAGAAAGTTTTCAAGTGAAACTTTAAAACTGGAATGTGGACAACTGCAGTTTTTATGGAAAGTAAAACTCAATGGTTTAAAAGTTATGTTTGCTTTTGTGTAATAGATATAAATCCTCATTTCAGATATTATTTCATTGTAACATTTGTTTCAGAAATGATTTATTTATAAGAAAATGTACTTTAACCACAGGAATAAGATAAAAGTTTTAACCATCGATCCCAAAAGAAGGTAAAAACTTAATATGCATCAAGGTCAAAGAGCACAACAGCATATTTCAATGTCACTCCACTAAGGAAATTTTACATTGCACTCGTTCTAGAACAATGTCTGGTAGTAAATACATGACAGTATCCACTCAGGTACAAATAAAAATAAGCAAAATGAGCATTAACATCAGAGAAAAGCCTATTCTCCTTCATTAGACGGCATAGGGAATGAATCACGGGTCACAATATAATGTTTTGCATCCGTTAGGGGACCATTCAACTGAACACCAAATATATTTCAAAACTTCATGCAGGGAAGAGGAAAGTATCTAAAAAAAAAAAAAAAAAAAAAACTTCTGAACAGCAATCTCTCTGGCAATACTTGCAAACAGTATAAAATGATTTCTCCAAAAACATGATGCAACAACTGCTACTGTGACACTGAAATTCAACAGCTGCTTGTATTTTCACAGTGTTTGTTTAGCTAGACGGGATAGAGTGTTCTGGAGCTATACTAATACTAATGCTGCTCTACAGTAGAATTCGGCTCTTGTAACAGAAAAAAACACTTTGTTTAATTACTGACCGTAGTTCTTCATTTTTGGTTACTGGAACAGGAAAAAAAAAAAATGAATGAATATTAGCAACAGTATTTGAATAATAATAATAATAAAAAAAAAAAAAAACGTAATACTGCTTAAAAAAAAAACCCCTACAAGATTGAAATAAACTAAGAAAATGCAAGCAAGATGATCTGAAGATCAGTCTCTCCTCTTTCTCCACATTTAGCAACACTTCCTCTTCTCATTCCACATCTGACTGGGTCAAGCTCGAAAGACAAGTCAGCGTCTATAAGAAACAAACAAAAACAAGCTCCCTAATTGCATATTTAATACCAAAAATAAATTGCCAATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU32012 True 1185 lncRNA 0.31 2 6425355 6441502

Neighbor

gene id symbol gene type direction distance location
CI01000004_06416971_06417931 THAP4 coding upstream 7211 6416582 ~ 6418144 (+)
CI01000004_06398828_06403391 AGXT, AGXTB coding upstream 21710 6398632 ~ 6403645 (+)
CI01000004_06273065_06297895 NA coding upstream 127081 6273065 ~ 6298274 (+)
CI01000004_06252342_06268652 SAP130B, SAP130 coding upstream 156200 6252342 ~ 6269155 (+)
CI01000004_06241579_06249282 MLLT1B coding upstream 174598 6241579 ~ 6250757 (+)
CI01000004_06463149_06463918 NA coding downstream 21647 6463149 ~ 6464006 (+)
CI01000004_06466871_06468477 NA coding downstream 25268 6466770 ~ 6468624 (+)
CI01000004_06487045_06494732 NA coding downstream 45543 6487045 ~ 6495544 (+)
CI01000004_06503758_06508636 GTF2B, GTF2B.L, TF2B coding downstream 61943 6503445 ~ 6508943 (+)
CI01000004_06571261_06572539 SEP15 coding downstream 129269 6570771 ~ 6572667 (+)
G28308 NA non-coding upstream 11099 6413748 ~ 6414256 (+)
G28293 NA non-coding upstream 29135 6370266 ~ 6396220 (+)
G28288 NA non-coding upstream 75591 6349482 ~ 6349764 (+)
G28255 NA non-coding upstream 113636 6310029 ~ 6311719 (+)
CI01000004_06236166_06239572 NA non-coding upstream 185400 6236166 ~ 6239955 (+)
G28325 NA non-coding downstream 15122 6456624 ~ 6456849 (+)
G28326 NA non-coding downstream 15396 6456898 ~ 6457281 (+)
G28440 NA non-coding downstream 134031 6575533 ~ 6576385 (+)
G28421 NA non-coding downstream 146380 6587882 ~ 6600374 (+)
G28471 NA non-coding downstream 196869 6638371 ~ 6638680 (+)
G28165 NA other upstream 692354 5732589 ~ 5733001 (+)
G27805 NA other upstream 1051552 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 2872909 3550329 ~ 3553423 (+)
G26245 NA other upstream 2902962 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 3666417 2745885 ~ 2769135 (+)
G28302 NA other downstream 28526 6470028 ~ 6502087 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 1213270 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 1992203 8414316 ~ 8439933 (+)
G28859 NA other downstream 2157733 8599235 ~ 8599603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G10819 NA non-coding NC_056700.1 CM032069.1 10058532 ~ 10063814 (+)