G28326


Basic Information

Item Value
gene id G28326
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6456898 ~ 6457281 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32029
CAGCTGGAGGACCAATTTGCAACTTATTAGGTCAACTGGCAACATGATTGGGTATAAAAAGAGCCTCTCAGAGTGGCAGTGTCTCTCAGAAGTCAAGATGGGCAGAGGATCACCAATTCCCCAATGCTGCGGTGAAAAATAGTGGAGCAATATCAGAAAGGAGTTTCTCAGAGAAAAATTGCAAAGAGTTTGAAGTTATCATAATCTACAGTGCATAATATCATCCAAAGATTCAGAGAATCTGGAACAATCTCTGTGTGTAAGGGTCAAGGCCGGAAAACCATACTGGATGCCCATGATCTTCGGGCCCTTAGACGGCACTGCATCACATACAGGAATGCTACTGTAATGGAAATCACAACATGGGCTCAGGAATACTTCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32029 True 384 lncRNA 0.44 1 6456898 6457281

Neighbor

gene id symbol gene type direction distance location
CI01000004_06424864_06438552 STK25B, STK25, STK25A coding upstream 18226 6424584 ~ 6438672 (+)
CI01000004_06416971_06417931 THAP4 coding upstream 38754 6416582 ~ 6418144 (+)
CI01000004_06398828_06403391 AGXT, AGXTB coding upstream 53253 6398632 ~ 6403645 (+)
CI01000004_06273065_06297895 NA coding upstream 158624 6273065 ~ 6298274 (+)
CI01000004_06252342_06268652 SAP130B, SAP130 coding upstream 187743 6252342 ~ 6269155 (+)
CI01000004_06463149_06463918 NA coding downstream 5868 6463149 ~ 6464006 (+)
CI01000004_06466871_06468477 NA coding downstream 9489 6466770 ~ 6468624 (+)
CI01000004_06487045_06494732 NA coding downstream 29764 6487045 ~ 6495544 (+)
CI01000004_06503758_06508636 GTF2B, GTF2B.L, TF2B coding downstream 46164 6503445 ~ 6508943 (+)
CI01000004_06571261_06572539 SEP15 coding downstream 113490 6570771 ~ 6572667 (+)
G28325 NA non-coding upstream 49 6456624 ~ 6456849 (+)
G28309 NA non-coding upstream 15396 6425355 ~ 6441502 (+)
G28308 NA non-coding upstream 42642 6413748 ~ 6414256 (+)
G28293 NA non-coding upstream 60678 6370266 ~ 6396220 (+)
G28288 NA non-coding upstream 107134 6349482 ~ 6349764 (+)
G28440 NA non-coding downstream 118252 6575533 ~ 6576385 (+)
G28421 NA non-coding downstream 130601 6587882 ~ 6600374 (+)
G28471 NA non-coding downstream 181090 6638371 ~ 6638680 (+)
G28474 NA non-coding downstream 185804 6643085 ~ 6643341 (+)
G28476 NA non-coding downstream 187728 6645009 ~ 6645279 (+)
G28165 NA other upstream 723897 5732589 ~ 5733001 (+)
G27805 NA other upstream 1083095 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 2904452 3550329 ~ 3553423 (+)
G26245 NA other upstream 2934505 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 3697960 2745885 ~ 2769135 (+)
G28302 NA other downstream 12747 6470028 ~ 6502087 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 1197491 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 1976424 8414316 ~ 8439933 (+)
G28859 NA other downstream 2141954 8599235 ~ 8599603 (+)

Expression


Co-expression Network