Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000004_06252342_06268652 |
| gene name | SAP130B, SAP130 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 6252342 ~ 6269155 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| sap130b | Acts upstream of or within floor plate formation; larval locomotory behavior; and thigmotaxis. Predicted to be located in nucleus. Predicted to be part of Sin3-type complex. Orthologous to human SAP130 (Sin3A associated protein 130). |
| sap130 | Involved in negative regulation of transcription by RNA polymerase II. Located in nuclear speck. |
| id | name | namespace |
|---|---|---|
| GO:0070822 | Sin3-type complex | cellular_component |
| id | description |
|---|---|
| K19192 | SAP130; histone deacetylase complex subunit SAP130 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000004_06252342_06268652.mRNA | True | 3545 | mRNA | 0.53 | 19 | 6252342 | 6269155 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_06241579_06249282 | MLLT1B | coding | upstream | 1585 | 6241579 ~ 6250757 (+) |
| CI01000004_06236166_06239572 | NA | coding | upstream | 12397 | 6236166 ~ 6239955 (+) |
| CI01000004_06156517_06161977 | PRRX1A, PRRX1, NOTO, PRRX1B | coding | upstream | 90273 | 6156329 ~ 6162069 (+) |
| CI01000004_06081028_06109613 | FAM129AB | coding | upstream | 142729 | 6080811 ~ 6109613 (+) |
| CI01000004_06054498_06061215 | IVNS1ABP, IVNS1ABPB | coding | upstream | 190959 | 6052812 ~ 6061383 (+) |
| CI01000004_06273065_06297895 | NA | coding | downstream | 3910 | 6273065 ~ 6298274 (+) |
| CI01000004_06398828_06403391 | AGXT, AGXTB | coding | downstream | 129477 | 6398632 ~ 6403645 (+) |
| CI01000004_06416971_06417931 | THAP4 | coding | downstream | 147427 | 6416582 ~ 6418144 (+) |
| CI01000004_06424864_06438552 | STK25B, STK25, STK25A | coding | downstream | 155429 | 6424584 ~ 6438672 (+) |
| CI01000004_06463149_06463918 | NA | coding | downstream | 193994 | 6463149 ~ 6464006 (+) |
| G28263 | NA | non-coding | upstream | 32371 | 6219643 ~ 6219971 (+) |
| G28258 | NA | non-coding | upstream | 59612 | 6182817 ~ 6192730 (+) |
| G28254 | NA | non-coding | upstream | 70461 | 6181665 ~ 6181881 (+) |
| G28244 | NA | non-coding | upstream | 78926 | 6173214 ~ 6173416 (+) |
| G28255 | NA | non-coding | downstream | 40874 | 6310029 ~ 6311719 (+) |
| G28288 | NA | non-coding | downstream | 80327 | 6349482 ~ 6349764 (+) |
| G28293 | NA | non-coding | downstream | 101111 | 6370266 ~ 6396220 (+) |
| G28308 | NA | non-coding | downstream | 144593 | 6413748 ~ 6414256 (+) |
| G28309 | NA | non-coding | downstream | 156200 | 6425355 ~ 6441502 (+) |
| G28165 | NA | other | upstream | 519341 | 5732589 ~ 5733001 (+) |
| G27805 | NA | other | upstream | 878539 | 5372825 ~ 5373803 (+) |
| CI01000004_03550525_03552621 | PTGER4C | other | upstream | 2699896 | 3550329 ~ 3553423 (+) |
| G26245 | NA | other | upstream | 2729949 | 3509017 ~ 3522393 (+) |
| CI01000004_02745885_02768971 | NA | other | upstream | 3493404 | 2745885 ~ 2769135 (+) |
| G28302 | NA | other | downstream | 200873 | 6470028 ~ 6502087 (+) |
| CI01000004_06571261_06572539 | SEP15 | other | downstream | 302065 | 6570771 ~ 6572667 (+) |
| CI01000004_07654234_07655677 | MRPL34 | other | downstream | 1385617 | 7654234 ~ 7656383 (+) |
| CI01000004_08414451_08436256 | NA | other | downstream | 2164550 | 8414316 ~ 8439933 (+) |
| G28859 | NA | other | downstream | 2330080 | 8599235 ~ 8599603 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00009211 | NA | coding | CM030126.1 | CM030126.1 | 29090055 ~ 29103281 (-) |
