CI01000004_06398828_06403391 (AGXT, AGXTB)


Basic Information

Item Value
gene id CI01000004_06398828_06403391
gene name AGXT, AGXTB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6398632 ~ 6403645 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06398828_06403391.mRNA
CTATATATTACATATAAGTCTTAATAATATTCAGTACTTCACAGACATTTGTTAAAACAATTTTTTACACTTTTTAATAGCTTCTTTTAAACACTGAAATAAAAACACATTACAAAAAATACAATTTGAGAATCAATATAACAAATTGCTTTTGTAAACTGAAATATCCGAGTTAAAATTAATATGTGCACCAGCCATGTCTACATTAACTTGCTCTGTAGATCTAATAGCATGTGCTGCACTGACTATACGAGGTACAAATGAAATATGCGCGCACTTGGCGAAGCAGGTGCCTTTGGAATGCGCGCGGTCCACCAAACACAGCGTCCACCGCGGGATGTCCTCTGTTACCATCCCTCCACCGGCGTGCATGCTCCGGCCACTCGAGGCTCCATTCCGGTACCTGTTCGGACCAGGGCCATCTAATGTGCCGCCTCGTATTTTAGCGGCAGGAGGGAGACCTATAATAGGTCATATGCACTCAGAAATGTTTGAGATTATGAATGATATCAAGAAAGGAATCCAGTACGCTTTTCAGACCAGTAACAACATGACTCTGGCCATGAGTGGCTCTGGCCACACGGCGATGGAATGCGCCGTGTCCAACATTGTGGAGCCTGGAGAAAGTGTTCTCGTTGCCGTCAATGGAATCTGGGGAGAACGAGTCGCAGAAATTGCTGAGCGAATGGGTGCAAAGGTTCACACCTTGGTAAAAACACCTGGAGGATATTTTACTAATGCAGAAATTGAACAGGCTCTGGCTAAACATAAGCCAGTTCTCTTCTTTCTCGCACATGGAGAGTCATCAGTTGGTCTGGTGCACCCAGTGGACGGCGTTGGGGAAATGTGTCACAAATACAACTGTTTGCTCTTAGTGGATTCAGTGGCATCATTGGGGGCTGCACCAATTTTAATGGACCAACAAAATATTGATATTCTGTATACTGGATCCCAGAAAGCATTGAATGCTCCACCTGGCACAGCACCAATTTCATTTAGCGAAAGAGCATGCCACAAGATGTTCAACAGGAAAACAAAGCCAGTATCCTACCTCCTTGATATGACCCATTTGTCCAATTACTGGGGGAATGATGGCAAGCCAGATAGAATATATCATCACACAGGACCTGTGTCTGGGTTTTTTGCCCTGAGGGAAAGTCTAGCCATCCTTGCTGAAACGGGTCTTGAGAACTCGTGGAGGCATCATAAAGAAGTTGCAGAGTATCTCTGGAAAGGCTTGGAAGACCTGGACTTGAAGCTGTTCATCAAGGACAGGGATCTGAGATTACCCTCAGTCACCACCATTGACATCCCTGAGGGATATAACTGGAAGGAATTGCTGGCTTACATCATGAAGCATCACCAAATAGAGTTCACAGGGGGTCTAGGGCCCTCTGTTGGCATGGTATTGCGGATTGGACTCATGGGATACAACTGCAACAAGGCCAATGCTGCGATGGCTCTTGCAGCTCTGGAAGACGGTTTAAAGCAGTGTCGAAAGACCAAAGCCTAAAGGCCAACTGTTTTTACTTTTGCAATTTCTTATGGTGATGCTTGTAGTGTGGATATTACATTAATGTAAATGAAGAGCTATTATATATAATGTTTTCATAATGGCTGGTATAATGGAGAAGAATTTTAGCTGATTAGAAATTGTGCCTCCATATCAATCAATGTTTTGAACAGTTTTTCCTCAATGTCCTTTTTAACGTTTCGACAAGCATCACTCCAGCACTTGAATAACCTTCATAAAAACATTACTGAGAA

Function

symbol description
agxtb Predicted to enable alanine-glyoxylate transaminase activity and serine-pyruvate transaminase activity. Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in mitochondrion. Predicted to be active in peroxisome. Human ortholog(s) of this gene implicated in primary hyperoxaluria type 1. Orthologous to human AGXT (alanine--glyoxylate and serine--pyruvate aminotransferase).
agxt Enables several functions, including alanine-glyoxylate transaminase activity; protein homodimerization activity; and pyridoxal phosphate binding activity. Involved in carboxylic acid metabolic process. Located in peroxisomal matrix. Implicated in primary hyperoxaluria type 1.

GO:

id name namespace
GO:0008453 alanine-glyoxylate transaminase activity molecular_function

KEGG:

id description
K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06398828_06403391.mRNA True 1767 mRNA 0.43 12 6398632 6403645

Neighbor

gene id symbol gene type direction distance location
CI01000004_06273065_06297895 NA coding upstream 100358 6273065 ~ 6298274 (+)
CI01000004_06252342_06268652 SAP130B, SAP130 coding upstream 129477 6252342 ~ 6269155 (+)
CI01000004_06241579_06249282 MLLT1B coding upstream 147875 6241579 ~ 6250757 (+)
CI01000004_06236166_06239572 NA coding upstream 158687 6236166 ~ 6239955 (+)
CI01000004_06156517_06161977 PRRX1A, PRRX1, NOTO, PRRX1B coding upstream 236563 6156329 ~ 6162069 (+)
CI01000004_06416971_06417931 THAP4 coding downstream 12937 6416582 ~ 6418144 (+)
CI01000004_06424864_06438552 STK25B, STK25, STK25A coding downstream 20939 6424584 ~ 6438672 (+)
CI01000004_06463149_06463918 NA coding downstream 59504 6463149 ~ 6464006 (+)
CI01000004_06466871_06468477 NA coding downstream 63125 6466770 ~ 6468624 (+)
CI01000004_06487045_06494732 NA coding downstream 83400 6487045 ~ 6495544 (+)
G28293 NA non-coding upstream 2412 6370266 ~ 6396220 (+)
G28288 NA non-coding upstream 48868 6349482 ~ 6349764 (+)
G28255 NA non-coding upstream 86913 6310029 ~ 6311719 (+)
G28263 NA non-coding upstream 178661 6219643 ~ 6219971 (+)
G28308 NA non-coding downstream 10103 6413748 ~ 6414256 (+)
G28309 NA non-coding downstream 21710 6425355 ~ 6441502 (+)
G28325 NA non-coding downstream 52979 6456624 ~ 6456849 (+)
G28326 NA non-coding downstream 53253 6456898 ~ 6457281 (+)
G28440 NA non-coding downstream 171888 6575533 ~ 6576385 (+)
G28165 NA other upstream 665631 5732589 ~ 5733001 (+)
G27805 NA other upstream 1024829 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 2846186 3550329 ~ 3553423 (+)
G26245 NA other upstream 2876239 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 3639694 2745885 ~ 2769135 (+)
G28302 NA other downstream 66383 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 167575 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 1251127 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 2030060 8414316 ~ 8439933 (+)
G28859 NA other downstream 2195590 8599235 ~ 8599603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location