CI01000004_06416971_06417931 (THAP4)


Basic Information

Item Value
gene id CI01000004_06416971_06417931
gene name THAP4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6416582 ~ 6418144 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06416971_06417931.mRNA
CTATATGAAATGTGTAGTGGAGGAAAAGTGTTCACCAGTCCTTCGGCTTGATTCCGAGTCAAGTGAATATCGTCAGAACGCCTAATGACTACATCTCCCAGAGTTCTTAGTGTCTAATCAGGAAGTAGATACGCACTGTGATGGCAAACAGATAGTAGTTCAGCAGCCGCAGCGAGTAATACATTTAGGGTCAATTATACAGTTAAAATTTAAAGATATTTGAAAATATTCAAGCGGAATGTCATGCCCATTCAATCACTCTGGTAGGACAACATAACGATTCCATTTAAATTCATAGACACCTGATTTTTCTTATTTCTAATGGCTTATAATTTTCGAGCTGTCGTCTGTAGGTCAAACGTCAAATCATGTAGCTTATTATCATTAAAATGAAACAAGCAATAAATAAACTGCAGGTGCAGCAGAATGTGACCGTGTCCGTGAACATATTTTATATCACGGATTTCCATGTTTCCGCAGCGGAGCTGAACCCCGCAGTGCTGCCGCTGGACTGGCTCCTGGGAACCTGGCAGTCCGATGAGCCAGGAGAGGGCTCCTTCCCCTCCATCGCTCCTTTTCGTTACACAGAGACTCTACATTTCTCACATGTAGGGCAGCCCGTGGTCAATTTTATGTTTAATGCGTTCCATGCTGAGAGCAAAAAGCCACTTCACAGGGAGTGTGGATTCATCAGGCTTCAGCCAGGCACCAACAGGGTGGCCTTCATCATTGCCCAGAACTCAGGTCTTGTGGAGATTGAGGAGGGGGAACTCACTGGACAGCAGCTGACTCTACACACTACTGCCCTGGCTAGAACTTCTTTTGCCAAGCAGCCTCATGTTCAACAGATTTCCAGGCACATCCAGTTAAAGCCGGATGGAAGGCTGGAACAGACCGTCTCTATGGCACTGGAAGGACAGCCTCTGACGCAGCATTTGCACATCACTTACCGCAGGACTGATTAACAAGCTGTCACATGGGAGGAAGATGTGTTTCTGAAAAGCACTTGAAGTAATGTACTCATCTGACCTAAAATAATGCTAGTTTATATATAGCAACCTGCAGGTGATGTTGATGGCAATATATTTGTGACTAAGAATGTTATCTAAAGTAACAGATGTGATCTGACATGTCTTCCCAAAAAAAACAAAAAAACATTGCAAATATTGTTACAATGA

Function

symbol description
thap4 Orthologous to human THAP4 (THAP domain containing 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06416971_06417931.mRNA True 1178 mRNA 0.44 4 6416582 6418144

Neighbor

gene id symbol gene type direction distance location
CI01000004_06398828_06403391 AGXT, AGXTB coding upstream 12937 6398632 ~ 6403645 (+)
CI01000004_06273065_06297895 NA coding upstream 118308 6273065 ~ 6298274 (+)
CI01000004_06252342_06268652 SAP130B, SAP130 coding upstream 147427 6252342 ~ 6269155 (+)
CI01000004_06241579_06249282 MLLT1B coding upstream 165825 6241579 ~ 6250757 (+)
CI01000004_06236166_06239572 NA coding upstream 176637 6236166 ~ 6239955 (+)
CI01000004_06424864_06438552 STK25B, STK25, STK25A coding downstream 6440 6424584 ~ 6438672 (+)
CI01000004_06463149_06463918 NA coding downstream 45005 6463149 ~ 6464006 (+)
CI01000004_06466871_06468477 NA coding downstream 48626 6466770 ~ 6468624 (+)
CI01000004_06487045_06494732 NA coding downstream 68901 6487045 ~ 6495544 (+)
CI01000004_06503758_06508636 GTF2B, GTF2B.L, TF2B coding downstream 85301 6503445 ~ 6508943 (+)
G28308 NA non-coding upstream 2326 6413748 ~ 6414256 (+)
G28293 NA non-coding upstream 20362 6370266 ~ 6396220 (+)
G28288 NA non-coding upstream 66818 6349482 ~ 6349764 (+)
G28255 NA non-coding upstream 104863 6310029 ~ 6311719 (+)
G28309 NA non-coding downstream 7211 6425355 ~ 6441502 (+)
G28325 NA non-coding downstream 38480 6456624 ~ 6456849 (+)
G28326 NA non-coding downstream 38754 6456898 ~ 6457281 (+)
G28440 NA non-coding downstream 157389 6575533 ~ 6576385 (+)
G28421 NA non-coding downstream 169738 6587882 ~ 6600374 (+)
G28165 NA other upstream 683581 5732589 ~ 5733001 (+)
G27805 NA other upstream 1042779 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 2864136 3550329 ~ 3553423 (+)
G26245 NA other upstream 2894189 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 3657644 2745885 ~ 2769135 (+)
G28302 NA other downstream 51884 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 153076 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 1236628 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 2015561 8414316 ~ 8439933 (+)
G28859 NA other downstream 2181091 8599235 ~ 8599603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016336 thap4 coding NC_007113.7 CM002886.2 22652981 ~ 22660232 (-)