AMCG00019147 (hhatla,hhatl,LOC107718176,LOC107688529,LOC107722653,LOC107689424)


Basic Information

Item Value
gene id AMCG00019147
gene name hhatla,hhatl,LOC107718176,LOC107688529,LOC107722653,LOC107689424
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5549593 ~ 5563655 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019147
CCCCCTCTCACTGCTCCCTCTGTACCGACTGCTGCTGCTTGCAGGGGGTGCCTGATCAGCATAACATTAACGGGACGGATGCATTAGAAGAGAgcatttttcttcccccctccccccttttttatttgaagagaggtttttttttttttgtatatgtctATTTCCCTCTCCTGAGCTCTGTGATTGACAGCTGAAGCACCACATTCAAGGTCTTTCTCGAATCTGTAATTGGTGCTAAACCTTCACAATGGGGATTAAGGCCGCTCTACCAAAGTATGAGTTGTATTTCTACACCTCCGTCCTAGCCCTCGCAGTCCTCTGGGCCGCCAGCTGGATCTACGAAGCGTCGAGCGaaaatgtggaCAGGAAGACCTTCAAAGAAAGTGTCCAACCAGGATGGACTTACTTTGGCAGGAAAATGGATGTAGCTGATTTTGAATGGGTCATGTGGTTTACAAAGTTCCGGAACCACATTGTCTTTGCCCTGTCCGGTCACGTCATCTTTGCAAAGATCTGCTCCATGATGGCCCCACAGCACAGATCCACTGTCTACATGGTCTACGGGATGCTGGCAGTCTTCTGCACCATGGGTTTGACCTACATGATGCTCATACTCTCCCACTGTATCCTGCTCTATAGCATCGCAATGGTCAAACAGAAATGGCTGTGCTTTGTTGCCGGCCTCGTCAGTCTGGCTACGTTCAAACTGGAGCCTGTTAGTTCCTGGCAGAATGGTTTTGTCACCGGCAACTTTGACCTGCAAGACGTCCTGTTCTTCGGTGGGAGTGGCTTCACCATCATGCGCTGTATGAGTTTCGCGCTGGAGAATTACGAAAAGAAAGATGGCAATTACACCTTTCTGGACCTGCTCAAGTACAACTTCTACctccccttcttcttcttcggaCCCATAATGACCTTTGATAAATTCCATGTCCAGGCCAATAACCCTGACTTGACTCGTAAAGAGCGAGAGCTGTGGAACATCAGGGTCAGTGCTTTGTTGCACCTGGGAGCCATCGTGGTGGTGgacatgtttttccatttcctctACATTCTCACCATCCCTTCGGACATGAAACTTTTGAAGAACCTCTCGGACTGGTCGCTAGctggCTTGGCCTACTCTAACCTGGTGTACGACTGGGTGAAAGCGGCCGTGATGTTTGGCGTCATCAATACCGTGTCCAGACTCGACCACCTCGACCCCCCACAGCCCCCGAAATGTATCACCATGCTCTATGTCTTCGCCGAAACACACTTCGACAGAGGAATAAACGACTGGTTGTGCAAGTATGTTTATGACTATCTTGGCGAGAACCATGACAGCATCCGAAAGGAGTTAATGGCGACAATATCCACCTTTGCTATCACTACGCTGTGGCTGGGACCGTGTGACATCGTGTACATCTGGTCTGTGTGCAACTGCTTTGGCTTGAACTTTGAGCTGTGGGTGGCGAAGTTCTTCCAACTTGAGCCATTTGCGACAATGGAGAACGCCATGCCCGAAGCCATGTCTCGCCGGATAAGAGGAGTGTTTAACGCAGCCAACTTCTGGGCAATTGTCTTGTACAACGTCTTGTCCCTCAACAGCCTGGAGTTTGCAAAACTGGTCGCCAGGAGACTGATCATCAAAGGCTTCCCCCTGTCCACGCTGTCCGTCCTGTTTGTCACTTACTGTGGTGTGCAGCTGATTAAGGAGAGGGAACGACGGCTGGccctggaggaagaggaagctGAGAAGGAGAAAGCCgaataaaataaaccactcTGTTTTCCTACCAAGCCCTGGAGTACTCAGTTCCCTTTGCACTTTCTGCACCGCCTTGGTTTTTACGTAACCACCCAAACTGAATCTCGATTCTGGCGTTCGGGAGTCCATATTCATCAACAACGCACACATCATACTGTGAAACGTTCTGAAGTGTACTTGCTGTACAGAAATGCCACAGGCCCCTATACCACTTgtgcgtttatttattttttaacttaataaataaaagcaggagGATGACTAATGCCCAATGTGGGATTatgtacattgaaattaatatattaaagaataatttaGTCTGTA

Function

symbol description
hhatla Predicted to enable acyltransferase activity. Predicted to be involved in negative regulation of N-terminal protein palmitoylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in cephalic musculature; hypaxial myotome region; myotome; pectoral fin musculature; and somite. Orthologous to human HHATL (hedgehog acyltransferase like).
hhatl Predicted to enable acyltransferase activity. Predicted to be involved in negative regulation of N-terminal protein palmitoylation. Located in perinuclear region of cytoplasm.

NR:

description
hedgehog acyltransferase-like, a

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K24679 HHATL; protein-cysteine N-palmitoyltransferase HHAT-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019147 True 2077 mRNA 0.48 12 5549593 5563655

Neighbor

gene id symbol gene type direction distance location
AMCG00019146 gars,LOC102797257,LOC107591252,LOC103132552 coding upstream 6658 5533680 ~ 5542935 (+)
AMCG00019143 NA coding upstream 159231 5366466 ~ 5390362 (+)
AMCG00019139 acaa1,LOC102793903 coding upstream 223644 5320273 ~ 5325949 (+)
AMCG00019140 NA coding upstream 231537 5306413 ~ 5318056 (+)
AMCG00019141 NA coding upstream 244079 5281298 ~ 5305514 (+)
AMCG00019148 NA coding downstream 2641 5566296 ~ 5570536 (+)
AMCG00019151 NA coding downstream 110322 5673977 ~ 5685061 (+)
AMCG00019156 NA coding downstream 405787 5969442 ~ 5980521 (+)
AMCG00019159 crhr2 coding downstream 748093 6311748 ~ 6312120 (+)
AMCG00019160 crhr2,LOC102776588,LOC106599903 coding downstream 791605 6355260 ~ 6380345 (+)
G31690 NA non-coding upstream 366554 5177934 ~ 5183039 (+)
G31663 NA non-coding upstream 421964 5093881 ~ 5127629 (+)
G31622 NA non-coding upstream 519498 4972972 ~ 5030095 (+)
G31566 NA non-coding upstream 801844 4747548 ~ 4747749 (+)
G31461 NA non-coding upstream 1684989 3864189 ~ 3864604 (+)
G31799 NA non-coding downstream 9117 5572772 ~ 5577699 (+)
G31820 NA non-coding downstream 186162 5749817 ~ 5750063 (+)
G31867 NA non-coding downstream 601076 6164731 ~ 6167316 (+)
G31872 NA non-coding downstream 623737 6187392 ~ 6187723 (+)
G31873 NA non-coding downstream 624780 6188435 ~ 6188700 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 1181390 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 2338703 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 2449422 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 2931541 2520104 ~ 2618052 (+)
G31110 NA other upstream 3402030 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 367049 5930704 ~ 5939597 (+)
G32005 NA other downstream 1856846 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 2781800 8345455 ~ 8384592 (+)
G32286 NA other downstream 3697719 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 3765824 9329479 ~ 9348819 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016315 klhl40a coding NC_007113.7 CM002886.2 21326957 ~ 21352101 (-)
grasscarp (Ctenopharyngodon idella) CI01000004_07075959_07081717 HHATL, HHATLA coding CI01000004 null 7074308 ~ 7081841 (+)