G32130 (itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428)


Basic Information

Item Value
gene id G32130
gene name itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8345455 ~ 8384592 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU40197
GTGAGATCTGCCCAACGTGCCCCGGAGTGTGTACCGAGCACAAggagtgtgtgcagtgcagggcATTTCAAACTGGAGAGAAGAAGGACACCTGCGAGAGAGACTGCTCCTATTTCAACCTCATCAAGGTGAAGGACCGTGATAAGTTGCCCCAGCCAAACCAGGCCTTTCCCCTCATGCACTGCAAGGAGAGAGACGCCAATGACTGCTGGTTCTATTACACCTACGCCATCAACAACACCGAAAAAGAAGTCCACGTGGTGGAGACTCAAGAGTGCCCTGCAGGGCCGGATATCATCCCAATTGTTGCCGGAGTGGTGGCAGGCATTGTGCTCATAGGCCTGGCCCTGCTGCTCATCTGGAAATTGCTGATGATCATCCACGACCGGAGAGAGTTTGCCAAGTTCGAGAAGGAGAAGATGAATGCCAAGTGGGACACGggtgAAAATCCCATCTATAAGAGTGCTGTGACAACTGTGGTCAATCCTAAATATGAGGGCAAATGATGGGGCCCCTCTTCTCTCTACACAACACTGTATGCAAAGTAGTTTTGgggggtgtttttattttattttttgttttgtttttgtagtcaCGGTATTTTAGCATTAAGTTAGGCCACTATTTCAGTAATTATTACTAacaatagtttttattttgtatgcattttttggaaaatgtacagtatgtataaacttggtttattgcttttttttgttttgttcatttttatgtttttattgtaatgttttattttttaaacatttcgcCACACGACATGCAAGATCGGCAAGGGTCAGATTATGCATTTCATAGAAACAACCCATTATGACAGAAGAGATCTGTGTACAATTTTTTTGTATCCATTGTATGGGTGGCAGGGCCTGAATTTATAACAAACTTGGTTTTGTGAGTTAGTTGGTTTTTGTGCATGTGATGGATAGATTTGGAACtcaataagtaaatacatggaggtttaattttttttcctccatcaaGGGATAGGTAATTGGATTGGTGAATGAAGTCTCAAGTGAAATAAGTGAAAGTATTTTTCTGGAAGTGGGGGCTGATTGCTTAATAAATTCAGGCCCGTTTCGAAACCCGTTTCCAGCAATGCCAAAAATAACTGCCTTATTTACGGAAATAAGccttattttaagtgttttaccATAAATTCCTCAGCCTTAGCTTGCTTCTTTTTATAATTatctttatactttttttttttattgaggtTTATTCCATTTGAAAGATCAATACAAAAGGATTCTGTACAAAGATCAGTGTTAAGGGAATGAACTTTTTGAAAAACTTCATTTAAAGGAAAGAGAACAGCCTTAAAGCGCCTCCTGTATGACACATCACACTCTTGTTTTAAAGTGCCTTTTTATTTCAGCGTTATGTTCACTTTTGCAATACTGtttctgaaattatttattaaataaagtacCAAAAATTACCTGGagtaca
>TU40198
GTGAGATCTGCCCAACGTGCCCCGGAGTGTGTACCGAGCACAAggagtgtgtgcagtgcagggcATTTCAAACTGGAGAGAAGAAGGACACCTGCGAGAGAGACTGCTCCTATTTCAACCTCATCAAGGTGAAGGACCGTGATGAGTTGCCCCAGCCAAACCAGGCCTTTCCCCTCATGCACTGCAAGGAGAGAGACGCCAATGACTGCTGGTTCTATTACACCTACGCCATCAACAACACCGAAAAAGAAGTCCACGTGGTGGAGATTCAAGCGTGCCCTGCAAGACGAGGCCTGCATTGAGCAGGACATGATTACAACAACGTCAAATCTCCCCCAGAGCTCATCTCATCAAGACCACCTACACAAAGGGTTCATTGATGGAGGGTTGCAAATGAACAGAACAAAAGCTTccagtacaaaataattaaccaaAGATGCAGGAACAATGGCATCTGTCTATAAATACTATATAGGTCATGTATTTGATTGCATTAATTTTATGATGTTTATCAtgattgtattcattatttttgctgaccagaattattttaaagcagcagattttccattatatattatactttataccTTGACTGCCCAACAATGTCCCTTTGTGTCATAAATTGCCCAGTCCTTGATTGGCCATATTAAAATAAGGTATTTGCACAGAATGTACACTGCTAGAACTGAATGCATTGTCTCCTGGATTCTGGTCCCCAGAGTCTGTTCTTCAAATCCATCCATTTAAAGACTCCATTACTTTTCAATCTGTTAGCTGTTGGTTTAAGAGTATAGACATCTGCTGAAGGGGAGCTGTTGACATATCTACCCAACTAGGCAtatcttt
>TU40199
GTGAGATCTGCCCAACGTGCCCCGGAGTGTGTACCGAGCACAAggagtgtgtgcagtgcagggcATTTCAAACTGGAGAGAAGAAGGACACCTGCGAGAGAGACTGCTCCTATTTCAAACTGGAGAGAAGAAGGACACCTGCGAGAGAGACTGCTCCTATTTCAACCTCATCAAGGTGAAGGACCGTGATAAGTTGCCCCAGCCAAACCAGGCCTTTCCCCTCATGCACTGCAAGGAGAGAGACGCCAATGACTGCTGGTTCTATTACACCTACGCCATCAACAACACCGAAAAAGAAGTCCACGTGGTGGAGACTCAAGAGTGCCCTGCAGGGCCGGATATCATCCCAATTGTTGCCGGAGTGGTGGCAGGCATTGTGCTCATAGGCCTGGCCCTGCTGCTCATCTGGAAATTGCTGATGATCATCCACGACCGGAGAGAGTTTGCCAAGTTCGAGAAGGAGAAGATGAATGCCAAGTGGGACACGCAAGAGAATCCAATATACAAGAGTCCTATTAATATGTTCCAGAATCCAAACTATGGACGTAAAGCTGCGGCTCTCTAAGTCTCCggtgAAAATCCCATCTATAAGAGTGCTGTGACAACTGTGGTCAATCCTAAATATGAGGGCAAATGATGGGGCCCCTCTTCTCTCTACACAACACTGTATGCAAAGTAGTTTTGgggggtgtttttattttattttttgttttgtttttgtagtcaCGGTATTTTAGCATTAAGTTAGGCCACTATTTCAGTAATTATTACTAacaatagtttttattttgtatgcattttttggaaaatgtacagtatgtataaacttggtttattgcttttttttgttttgttcatttttatgtttttattgtaatgttttattttttaaacatttcgcCACACGACATGCAAGATCGGCAAGGGTCAGATTATGCATTTCATAGAAACAACCCATTATGACAGAAGAGATCTGTGTACAATTTTTTTGTATCCATTGTATGGGTGGCAGGGCCTGAATTTATAACAAACTTGGTTTTGTGAGTTAGTTGGTTTTTGTGCATGTGATGGATAGATTTGGAACtcaataagtaaatacatggaggtttaattttttttcctccatcaaGGGATAGGTAATTGGATTGGTGAATGAAGTCTCAAGTGAAATAAGTGAAAGTATTTTTCTGGAAGTGGGGGCTGATTGCTTAATAAATTCAGGCCCGTTTCGAAACCCGTTTCCAGCAATGCCAAAAATAACTGCCTTATTTACGGAAATAAGccttattttaagtgttttaccATAAATTCCTCAGCCTTAGCTTGCTTCTTTTTATAATTatctttatactttttttttttattgaggtTTATTCCATTTGAAAGATCAATACAAAAGGATTCTGTACAAAGATCAGTGTTAAGGGAATGAACTTTTTGAAAAACTTCATTTAAAGGAAAGAGAACAGCCTTAAAGCGCCTCCTGTATGACACATCACACTCTTGTTTTAAAGTGCCTTTTTATTTCAGCGTTATGTTCACTTTTGCAATACTGtttctgaaattatttattaaataaagtacCAAAAATTACCTGGagtaca

Function

symbol description
itgb1a Enables fibronectin binding activity and protein heterodimerization activity. Acts upstream of or within several processes, including atrioventricular valve morphogenesis; glial cell development; and positive regulation of sprouting angiogenesis. Predicted to be located in several cellular components, including lamellipodium; melanosome; and ruffle membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Is expressed in several structures, including cardiovascular system; integument; liver; periderm; and pleuroperitoneal region. Orthologous to human ITGB1 (integrin subunit beta 1).

NR:

description
PREDICTED: integrin beta-1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40197 False 1473 TUCP 0.39 4 8345455 8384592
TU40198 False 849 lncRNA 0.43 3 8345455 8347293
TU40199 True 1604 TUCP 0.39 6 8345455 8384592

Neighbor

gene id symbol gene type direction distance location
AMCG00019197 NA coding upstream 22627 8308993 ~ 8322828 (+)
AMCG00019194 nrp1 coding upstream 46689 8289074 ~ 8298766 (+)
AMCG00019193 LOC106568841 coding upstream 316728 8014532 ~ 8028727 (+)
AMCG00019192 pard3,LOC101064277,LOC106929164,LOC102309987,LOC102775598 coding upstream 361787 7983197 ~ 7983668 (+)
AMCG00019191 NA coding upstream 381279 7949498 ~ 7964176 (+)
AMCG00019196 NA coding downstream 38554 8423146 ~ 8423334 (+)
AMCG00019195 NA coding downstream 63288 8447880 ~ 8461935 (+)
AMCG00019201 LOC101470268,LOC102291500,LOC102212547,LOC103361717 coding downstream 113283 8497875 ~ 8521854 (+)
AMCG00019200 NA coding downstream 156021 8540613 ~ 8541305 (+)
AMCG00019202 arhgap12,LOC102789345 coding downstream 193333 8577925 ~ 8606120 (+)
G32113 NA non-coding upstream 173594 8171645 ~ 8171861 (+)
G32048 NA non-coding upstream 724643 7620504 ~ 7620812 (+)
G32010 agap3,LOC107383869 non-coding upstream 913511 7431680 ~ 7431944 (+)
G31992 NA non-coding upstream 1120458 7224632 ~ 7224997 (+)
G31947 NA non-coding upstream 1525420 6819765 ~ 6820035 (+)
G32235 NA non-coding downstream 510647 8895239 ~ 8933746 (+)
G32268 NA non-coding downstream 779051 9163643 ~ 9222509 (+)
G32287 mpp7,LOC106578549 non-coding downstream 924045 9308637 ~ 9324063 (+)
G32290 NA non-coding downstream 965257 9349849 ~ 9352655 (+)
G32321 LOC103376870 non-coding downstream 1308677 9693269 ~ 9750270 (+)
G32005 NA other upstream 924372 7420501 ~ 7421083 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 2405858 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 3977252 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 5134565 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 5245284 3094452 ~ 3100171 (+)
G32286 NA other downstream 876782 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 944887 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 985306 9369898 ~ 9628662 (+)
G32539 NA other downstream 2020047 10404639 ~ 10409497 (+)
G33159 LOC103376870 other downstream 6054661 14439253 ~ 14486706 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location