G32268


Basic Information

Item Value
gene id G32268
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9163643 ~ 9222509 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU40402
aaaaaaaaaaaaacagcagctgaaaaacaaaaacaaatggggcataaaaaactaaaaactgccCTGCAATGGAGCCGGTTGATGTAGCGCTGTTCTACACAGGGTGGTTGGAATTAGATCTCTTATGGTTGTGTTCTTTGACCAAACTGTTCCAAGGTGCTGCAGCTTTAATTGCACACCATCAGGCACTGGTATTAAATCTATGTAATACAGGATCACTGGATGATAAAAACAGACCCTTGAACCATTGCATCGAGACATGCCAAGCCTTCTAAAGGAGAGGCTTCCATCATTGAGCCATCTATTTGTGCTCAAACCCTTTTACATCTTGCTCAAACAAAAGGTTAAATAATAATCCTCCTTACcttaataaaatcaaaccaaccagacttttcattaatttacatCTCGCCACCATTCCATGCAGATATAAAGCATGCTCGAGGCAATGGTTCACCGATCTATTAACAAAAGCTAAAGTTTGCAGACAAGTTAACATGTAAAAGGCTAGGTACTTAGCCACCTCAGCATCGATTAGTTTGGATGTGAAAGCTCCAATAAGCATGGCTTCCCATGGCTTCACtctacaaaacatatttacaacATGAATACATCTACAAGAAATCTACATTTCAAGAGTTTTACAAACCATACCTTGTATCACCCTTCAAATCATTTCCCCCTCCCCTGCCTTACTTTCCTTGCCCAGCCCAACGGTCCAAAGCCTACCGAACTGCAGCTCAAAAGTGTTAAGACTGGGCACAGAATAACAGTTCTTGGACTCCACCCATGTGCAATTTTCCTCAAGTTCTCAAACCATAAAGGAATTCTGATTCTTCAACTTTTCAAGTTCTTTAATTTGTTGTCTCAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40402 True 874 lncRNA 0.39 2 9163643 9222509

Neighbor

gene id symbol gene type direction distance location
AMCG00019206 NA coding upstream 107787 9046918 ~ 9055856 (+)
AMCG00019205 NA coding upstream 378704 8781781 ~ 8784939 (+)
AMCG00019202 arhgap12,LOC102789345 coding upstream 557523 8577925 ~ 8606120 (+)
AMCG00019200 NA coding upstream 622338 8540613 ~ 8541305 (+)
AMCG00019201 LOC101470268,LOC102291500,LOC102212547,LOC103361717 coding upstream 641789 8497875 ~ 8521854 (+)
AMCG00019214 NA coding downstream 134589 9357098 ~ 9376745 (+)
AMCG00019212 wu:fc01d11,LOC107657783,LOC107554911,LOC107732095 coding downstream 184792 9407301 ~ 9414186 (+)
AMCG00019217 armc4 coding downstream 403901 9626410 ~ 9628658 (+)
AMCG00019218 armc4 coding downstream 431817 9654326 ~ 9663886 (+)
AMCG00019219 mkx,LOC107665863,LOC103377095,LOC106578547 coding downstream 455151 9677660 ~ 9714621 (+)
G32235 NA non-coding upstream 229897 8895239 ~ 8933746 (+)
G32113 NA non-coding upstream 991782 8171645 ~ 8171861 (+)
G32048 NA non-coding upstream 1542831 7620504 ~ 7620812 (+)
G32010 agap3,LOC107383869 non-coding upstream 1731699 7431680 ~ 7431944 (+)
G31992 NA non-coding upstream 1938646 7224632 ~ 7224997 (+)
G32287 mpp7,LOC106578549 non-coding downstream 86128 9308637 ~ 9324063 (+)
G32290 NA non-coding downstream 127340 9349849 ~ 9352655 (+)
G32321 LOC103376870 non-coding downstream 470760 9693269 ~ 9750270 (+)
G32324 NA non-coding downstream 495513 9718022 ~ 9718564 (+)
G32325 NA non-coding downstream 496530 9719039 ~ 9726753 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 779051 8345455 ~ 8384592 (+)
G32005 NA other upstream 1742560 7420501 ~ 7421083 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 3224046 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 4795440 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 5952753 3190612 ~ 3210890 (+)
G32286 NA other downstream 38865 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 106970 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 147389 9369898 ~ 9628662 (+)
G32539 NA other downstream 1182130 10404639 ~ 10409497 (+)
G33159 LOC103376870 other downstream 5216744 14439253 ~ 14486706 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004709 waca coding NC_007123.7 CM002896.2 23371542 ~ 23416061 (+)
grasscarp (Ctenopharyngodon idella) CI01000063_04310020_04338879 WACA, WAC coding CI01000063 null 4310020 ~ 4339018 (+)
rainbow trout (Oncorhynchus mykiss) LOC110490038 LOC106590019 misc NC_048579.1 CM023233.2 38494289 ~ 38568479 (+)