XLOC_004709 (waca)


Basic Information

Item Value
gene id XLOC_004709
gene name waca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 23371542 ~ 23416061 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009333
GGTGTGTGAGGAAGGCTGAGCTTCGCTGTTCTGTAGATAGGGGCAgagttttggtgtgtgtgtgagtgggagATGGACCGAGGGCGCTCTACTGACTAGCAGAGGCGAAGAGCGACTCCAATAGCCAGAACTATTGAAATAATATACGCGATCGTGTCGTCGATAGCCCACTCCTAAAGCAAAATAAGTCGCCCATCTTTCACATCTACTTCACACACACTAACACGGCATTGATGGTAATGTATGCAAGGAAACAACCGAGACTCGGCGATGGgTGCACCGACCGAAGGGATTCTCAGCCCTATCAGACTCTTAAGTACTCATCCAAGAGTCACCCGGATCACAGACATGAGAAGATGCGCGACAGTAATGATGCCACTCCACCATGCAAGATGCTGCGGAGATCAGACAGTCCAGACAATAAACACATGGACAACACTGGCCATGGCAGAGCAAaagccatccatccacacagagGGAGAGAGCGAGAAGGAGGGACCAGTATATCTCCTCAAGAGAACTCCCATAACCACAGCTCTCTGCACAGCTCCAACTCCCATTCGAATCCCAACAAATCATCAGACACGcCATTTGAACCGGCAGATGATTGGTCTGAACACATCAGTTCTTCAGGGAAGAAGTACTACTACAACTGCAGGACAGAGGTGTCTCAGTGGGAGAAACCCAAAGAGTGGCTGGAGAGAGAACAAAGACAGAAGGAGGCAACCAAGACGGCTGCAGTGGTCAACAGTTTCCCTAAAGACAGGGACTACAGGCGTGAGGCCATGCAGGCTACACCCGCCAGCTACTCCAGCACTAAGTCTTCAATTGCCACAGAGAAGCCTTCCTCACTCAcaccctcctcttcctctgcTGCTGTGTCTGGCTTAAATGTTCCCAATTCAGCCAGCAGCGCTTCTGGCTCTACAGTTCCCGTTTCTCCAGTGATGCAGTCACCAGCCCCGCCCACTCTCCTCCAAGACCCCTCTCTCTTACGACAGCTCCTCCCCGCTCTGCAAACGGCCTTGCAGCTGAACAATGCCAGTGTAGACATGGCCAAGATCAACGAAGTTCTCACAGCTGCAGTAACTCAGGCTTCACTGCAGTCCATTCTCCATAAGATTCTGACTGCTGGTCCATCTGCCTTCAACATCACAACACTGCTTTCCCAGGCTACTCAGTTGTCCAACCAAGTAGCCCAACAGTCCAGCCAGTCTCCAATGTCTCTGACGTCAGACGCTTCCTCTCCTCGGTCGTATGTGTCTCCCAGAATCAGCACACCGCAAACCAACACAGCCTCCCTCAAACCGCCCCTCAGCACCACACCAGTCTCCTCACAGACCAagATTAACGCTATGACAGTAAAGTCCAGTTCTCTTCCTCCACCATCATCCCAGCAGCCTCTTTCCACAGAAAAACATCACGACAATGGCAATTCTCCACGGACGCTGCAGAGACAGAGcagTCAAAGAAGTCCATCTCCAGGTCCAAACCACATGGGAAGtaatagcagcagcagcagtaataatGGTGGTGGAGGAGGTGGTCAAGGACCAGGTGTAGTTAGCGGAGCGATGCCCCCGGGTTCAGTACCTCCTGGCACAGCCCCTGGCAGAGCAACATGTTCCTTCACACCCACACTGGCAGCACACTTCAATGAGAACCTCATCAAACATGTGCAGGGGTGGCCTGCCGAGCACGTGGAGAAGCAGGCCTCGCGGTTACGTGAAGAGGCTCACACCATGGGCAGCATCTACATGTCAGAGAACTGCACAGAGCTGAAGAACCTGCGCTCACTGGTGCGGGTGTGTGAGATTCAAGCCACATTGCGCGAGCAGAGGATACTGTTTTTGAGACAACAAATTAAAGAACTTGAAAAGTTGAAGAATCAGAATTCCTTCATGGTTTGAGGAACTCAGGGTTTGAGACGTGGTCTTTGAAACAGgaggaaagagggagagagaaggAAGGGGTAGGTGAATGAGTGGGCCAAACCCATTTCACGCGTGGCGGAACCCTGGAGAAACAAAGTTCTGTTGCGTTCTGCTCTGGGCCCAGTCTTACATTAAAAACGAGCTGCAGCGAGGTCTTGCTTGGACTTGAGGGGTGGGTGTTCGGGGAGAGGTCTGCCCTCTCCCCGTCCCTGTACATGTAGATTATTTGTAGATGTTCTTTCCatgttgtaaatatattttgtagATGAAGCCATGGGAAGCCATGCCTATCAAAGCTTTTGACATCCAAACGTTAAACTAATCGACACCGAGGCAGACCGGGATTCCAAGCCACCGTATCTAGAACTCTTTTAAAAtgacatgattaaaaaaaaacaaacaaaacaaaaaagcaaaccaaTGCTCTTCAGTTAAACGATCGGTGAACCATTGCCTTGAGCATGAACCAGACCTGCATGGAAAAGCTGGACTTAGACGAccggactttttttttttttcctaggaCGATGACACGCTCACTTTATCTTCTCACAAACATGCACACGTATCCACCGGTTCATTTTTTTCTCTCGCTGCATATGAAAAATGGTAGTAATGCTACATGGTTATTTGGTTAGTTTCCGTTTCTTTCTCTGGTTGCACTATAATGGTTTCATTCCCTCACCCCATGCCTTCTGAGGGGGTTTACATCATGCTTGTCCACAATGGTTCGGTGGTCTCATACCTGCCCTGTATGGCCCAGCAATGCGCCCAGTGCCTGTGTTTATGATGGAGAGAacataagagagagagaaagcgaatCATCATTCCTGCAGCTCAACCCATGTCGTTCTCCTTCCTCACCTGAAGACCCAgaattcttttttctttctttttcctcttAATCTTTCcaggttgtttttctttttattttctgtacccttgttttctttaaaaaaaattaaaataaaaaaataactgtactttataaaaaaaaaaggaaaaagtaaatGCGAGTTGCTGTGACGGCTTGCGTTGAAAACCAGAGTTCATTCCTATGTACAGTTGCTAAGTAAAGTTAAATGAAGTTAAAGTTTTATTAAAGTTGCAGTGATTACTAGTCTATCa

Function

symbol description
waca Predicted to enable RNA polymerase II complex binding activity and chromatin binding activity. Predicted to be involved in several processes, including histone ubiquitination; positive regulation of TORC1 signaling; and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin organization. Predicted to be active in nucleus. Orthologous to human WAC (WW domain containing adaptor with coiled-coil).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0010390 histone monoubiquitination biological_process
GO:0071894 histone H2B conserved C-terminal lysine ubiquitination biological_process
GO:0044783 G1 DNA damage checkpoint biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003682 chromatin binding molecular_function
GO:0000993 RNA polymerase II complex binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2624 Predicted to enable RNA polymerase II complex binding activity and chromatin binding activity. Predicted to be involved in several processes, including histone ubiquitination; positive regulation of TORC1 signaling; and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin organization. Predicted to be active in nucleus. Orthologous to human WAC (WW domain containing adaptor with coiled-coil).

Ensembl:

ensembl_id ENSDARG00000012577

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009333 True 3062 mRNA 0.48 13 23371542 23416061

Neighbor

gene id symbol gene type direction distance location
XLOC_004708 BX927205.1 coding upstream 261265 23110163 ~ 23110277 (+)
XLOC_004707 NA coding upstream 331451 23037447 ~ 23040091 (+)
XLOC_004706 rab18a coding upstream 438018 22921477 ~ 22933524 (+)
XLOC_004705 afap1 coding upstream 455228 22823219 ~ 22916314 (+)
XLOC_004704 cdca9 coding upstream 555695 22672323 ~ 22815847 (+)
XLOC_004710 bambia coding downstream 8047 23424108 ~ 23430356 (+)
XLOC_004711 NA coding downstream 38368 23454429 ~ 23605722 (+)
XLOC_004712 BX005058.1 coding downstream 161205 23577266 ~ 23577391 (+)
XLOC_004713 NA coding downstream 233831 23649892 ~ 23651056 (+)
XLOC_004714 mtpap coding downstream 248274 23664335 ~ 23674621 (+)
XLOC_004701 NA non-coding upstream 752420 22618388 ~ 22619122 (+)
XLOC_004700 CR925753.1 non-coding upstream 793012 22578404 ~ 22578530 (+)
XLOC_004696 NA non-coding upstream 1066701 22258962 ~ 22304841 (+)
XLOC_004716 NA non-coding downstream 362891 23778952 ~ 23779177 (+)
XLOC_004717 NA non-coding downstream 396469 23812530 ~ 23935333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_04310020_04338879 WACA, WAC coding CI01000063 null 4310020 ~ 4339018 (+)
bowfin (Amia calva) G32268 NA non-coding CM030124.1 CM030124.1 9163643 ~ 9222509 (+)