XLOC_004714 (mtpap)


Basic Information

Item Value
gene id XLOC_004714
gene name mtpap
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 23664335 ~ 23674621 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009337
ATGTCCAATCGCAGCCACCGTAGAGCCAACTTCTGCGCTTGCGCCCGTCTCAAATCAACAATGGCGGCCTCCCTCGGCGTGTGTAGGTTACATTTTAGAAGTTTAGGAGGTCTTGATAGATTTTGTCTCGGATTGGAACCTCAAACGCAAAGAAGATGTACGTCAACTATACCAGCAATCAAAACCCCGACCGGGACCAAGACCGCAGACTTCGCGAAGAAGAGTAAAACATTTCAAGCAATCCAAGAGGAGCGACGAGAACAAGCTGAAAGATCTGTTTTAATCAGCTGTCCTGCTAAATTCAGCGAAAAGAAGTTTTTAGATTTCTTCTCCAAGCATGGGACAGTCAACAAGCATTTCTTCTACAACAGTTTTGGTGCGTATGCGGTAGTTGAATTCTCCAATAAAGAGAGCATAGCCTCCTTGAAGGAGAGCACAGGTATACCAGCTGTTGATCATGAAGCTGCAGTGCCTTTTAAATCCCGGCTGCTGTCACTGAAATGGCCAGGCATTCAGTCAAGCAACTATCCCACGCCAAATTTCAAGGAGCAATCCCCTCCGAACATCGGTGACATTACCAATCTGCTCTTGCAAAAGCATAGTGTAGATGAGCAGCTTCAATGTTTGACAGAGACTTTACAGCTTACAGAGGAAAACATAAGTCTGCGCTTCCTTGTCTGTTCTCTGCTTGGAGACATAGCTGGAGCATACTTCCCGGAATGCATCATTAGGCCTTTTGGTTCTACTGTAAACAGCTTCGGCAAACTTGGCTGTGATGTTGACATGATTCTGGATCTAGACGGCATATATGCACGAAGCCAGAAAAAGGGCTCGGGACTGTCTCTGGAGTACCAGGTGAAGACAGGGCCATCAGAGCGGGCTGTGACACAGAGTATCCTCTCAGTCGTTGGAAAATGTGTGGACCAGTTTGGCCCTGGATGTGTGGGAGTCCAGAACATTCTCCAAGCACGATGTCCTATTGTCCGCTTTGCTCATCAGCCTTCTGGCTTTCAGTGCGATCTTACAGCCAACAACAAGGTGGCGATGAAAAGTTCAGAGCTGCTTTTTCTATATGGGCATCTGGACCCTCGTGTTCGGCATCTGGTTTTTAGTGTGCGGTGCTGGGCTCGGGCTCATAGCATCACAAGCAGTATACCTGGAGCATGGATAACCAACTTCTCGTTAACAGTCATGGTAGTGTTCTTTCTACAGCAGAGGAGTCCTGCCATGCTGCCCACACTGGACCGTCTGAAAGAACTAGCAGGACCGTCGGATAAGTGTGTCATTGAGGGCAATGACTGCACTATTGTCAGTGACCTTAGCAAGATTGCACTGCAGAAGAACACAGACACGTTAGAAAAACTGTTGCAGGAATTCTTCGAGTTTTATGGCAATTTCCCCTTCAACAAGGCATCGATCAATATTAGGAAGGGAAAGGAGCAGTCCAAACCGGAGGCAGCAGCTTTGCACATACAGAATCCATTTGAAGCCACTCTAAACGTTAGCAAGAACGTTAATGCAGCGCAGTTAGAACGTTTTGTGAAGCTTTGTCAAGAAAGTGCTTGGCTATTCCAGCAGAAGGAAAATCTTGAGCCAGGTTCTACCCAGTCGAATGGGTCTGTCTCGCCGTGGGGGTTCGCTGCTCTTCTCGCCCCTTCAGTCGCCTCAGGAACCGGGGTGAAGAGTCGcaggaagaaaaaaacagaacctGCTAGCTCACGAATAAAGAACCTGTTAGACTCTCTGAAGATTAAAGGTGGTGAAACTGTTGCAAAGAAGGGAAGTGCAAACTCTAGTAGGTGATGCGGTCAATAAATCTCACTCACCCTGAAGGAAAAGgaccagatatatatatatataaaaaactgacTAACTTGTCCTAAGGGGGAAACAGATGTGAAGTTTGTGTTTTTCTACAGTAAGAATCTGTAAGTCTTTTAAGAGCAGTTAAAACTAAGCTCAGCCTCCTTTTCACTAAAGTATTTCACATGAAAGAGAAACTTTGTAGATCCCAACATGATATAACATCGAAAGAGGTCCACTGTGGTTTTTGACTCTTAGGGAATAGAAGCCTAATGGTTGTTGTGTTGATCTGATAACTGCAATCATTACAGCCTCCGCAGAACCTCTGAACACTAAAAGGTTTGCATGGAACCAATATGATTTGTTAGATCACACACGCTCCCATCATCGTTTCTGCTCCATCATACTAATACAGTGGCCCCATAActttatgtaaaaaaagaaatcaagtcAGGTTGTCATGTCAGTGTCAAGATTTTGAGAAGTACAAGAAGTATAAACTACTGtacataaatgtttttataaaatattaaaacaaaataattacaatCAG

Function

symbol description
mtpap Predicted to enable RNA adenylyltransferase activity. Predicted to be involved in mRNA polyadenylation. Predicted to be active in mitochondrion. Is expressed in head; ovary; and testis. Human ortholog(s) of this gene implicated in spastic ataxia 4. Orthologous to human MTPAP (mitochondrial poly(A) polymerase).

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0006397 mRNA processing biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0004652 polynucleotide adenylyltransferase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-101208-3 Predicted to enable RNA adenylyltransferase activity. Predicted to be involved in mRNA polyadenylation. Predicted to be active in mitochondrion. Is expressed in head; ovary; and testis. Human ortholog(s) of this gene implicated in spastic ataxia 4. Orthologous to human MTPAP (mitochondrial poly(A) polymerase).

Ensembl:

ensembl_id ENSDARG00000076155

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009337 True 2356 mRNA 0.45 9 23664335 23674621

Neighbor

gene id symbol gene type direction distance location
XLOC_004713 NA coding upstream 13279 23649892 ~ 23651056 (+)
XLOC_004711 NA coding upstream 58613 23454429 ~ 23605722 (+)
XLOC_004712 BX005058.1 coding upstream 86944 23577266 ~ 23577391 (+)
XLOC_004710 bambia coding upstream 233979 23424108 ~ 23430356 (+)
XLOC_004709 waca coding upstream 248274 23371542 ~ 23416061 (+)
XLOC_004715 jcada coding downstream 88345 23762966 ~ 23796707 (+)
XLOC_004716 NA coding downstream 104331 23778952 ~ 23779177 (+)
XLOC_004717 NA coding downstream 137909 23812530 ~ 23935333 (+)
XLOC_004718 CU914155.1 coding downstream 236211 23910832 ~ 23910949 (+)
XLOC_004719 psme4b coding downstream 316655 23991276 ~ 24053079 (+)
XLOC_004708 BX927205.1 non-coding upstream 554058 23110163 ~ 23110277 (+)
XLOC_004707 NA non-coding upstream 624244 23037447 ~ 23040091 (+)
XLOC_004721 AL928656.1 non-coding downstream 539780 24214401 ~ 24214517 (+)
XLOC_004723 BX255907.2 non-coding downstream 743603 24418224 ~ 24418340 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_04479946_04487899 MTPAP coding CI01000063 null 4479824 ~ 4487907 (+)