RNA id: AMCG00019147


Basic Information

Item Value
RNA id AMCG00019147
length 2077
RNA type mRNA
GC content 0.48
exon number 12
gene id AMCG00019147
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5549593 ~ 5563655 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCCTCTCACTGCTCCCTCTGTACCGACTGCTGCTGCTTGCAGGGGGTGCCTGATCAGCATAACATTAACGGGACGGATGCATTAGAAGAGAgcatttttcttcccccctccccccttttttatttgaagagaggtttttttttttttgtatatgtctATTTCCCTCTCCTGAGCTCTGTGATTGACAGCTGAAGCACCACATTCAAGGTCTTTCTCGAATCTGTAATTGGTGCTAAACCTTCACAATGGGGATTAAGGCCGCTCTACCAAAGTATGAGTTGTATTTCTACACCTCCGTCCTAGCCCTCGCAGTCCTCTGGGCCGCCAGCTGGATCTACGAAGCGTCGAGCGaaaatgtggaCAGGAAGACCTTCAAAGAAAGTGTCCAACCAGGATGGACTTACTTTGGCAGGAAAATGGATGTAGCTGATTTTGAATGGGTCATGTGGTTTACAAAGTTCCGGAACCACATTGTCTTTGCCCTGTCCGGTCACGTCATCTTTGCAAAGATCTGCTCCATGATGGCCCCACAGCACAGATCCACTGTCTACATGGTCTACGGGATGCTGGCAGTCTTCTGCACCATGGGTTTGACCTACATGATGCTCATACTCTCCCACTGTATCCTGCTCTATAGCATCGCAATGGTCAAACAGAAATGGCTGTGCTTTGTTGCCGGCCTCGTCAGTCTGGCTACGTTCAAACTGGAGCCTGTTAGTTCCTGGCAGAATGGTTTTGTCACCGGCAACTTTGACCTGCAAGACGTCCTGTTCTTCGGTGGGAGTGGCTTCACCATCATGCGCTGTATGAGTTTCGCGCTGGAGAATTACGAAAAGAAAGATGGCAATTACACCTTTCTGGACCTGCTCAAGTACAACTTCTACctccccttcttcttcttcggaCCCATAATGACCTTTGATAAATTCCATGTCCAGGCCAATAACCCTGACTTGACTCGTAAAGAGCGAGAGCTGTGGAACATCAGGGTCAGTGCTTTGTTGCACCTGGGAGCCATCGTGGTGGTGgacatgtttttccatttcctctACATTCTCACCATCCCTTCGGACATGAAACTTTTGAAGAACCTCTCGGACTGGTCGCTAGctggCTTGGCCTACTCTAACCTGGTGTACGACTGGGTGAAAGCGGCCGTGATGTTTGGCGTCATCAATACCGTGTCCAGACTCGACCACCTCGACCCCCCACAGCCCCCGAAATGTATCACCATGCTCTATGTCTTCGCCGAAACACACTTCGACAGAGGAATAAACGACTGGTTGTGCAAGTATGTTTATGACTATCTTGGCGAGAACCATGACAGCATCCGAAAGGAGTTAATGGCGACAATATCCACCTTTGCTATCACTACGCTGTGGCTGGGACCGTGTGACATCGTGTACATCTGGTCTGTGTGCAACTGCTTTGGCTTGAACTTTGAGCTGTGGGTGGCGAAGTTCTTCCAACTTGAGCCATTTGCGACAATGGAGAACGCCATGCCCGAAGCCATGTCTCGCCGGATAAGAGGAGTGTTTAACGCAGCCAACTTCTGGGCAATTGTCTTGTACAACGTCTTGTCCCTCAACAGCCTGGAGTTTGCAAAACTGGTCGCCAGGAGACTGATCATCAAAGGCTTCCCCCTGTCCACGCTGTCCGTCCTGTTTGTCACTTACTGTGGTGTGCAGCTGATTAAGGAGAGGGAACGACGGCTGGccctggaggaagaggaagctGAGAAGGAGAAAGCCgaataaaataaaccactcTGTTTTCCTACCAAGCCCTGGAGTACTCAGTTCCCTTTGCACTTTCTGCACCGCCTTGGTTTTTACGTAACCACCCAAACTGAATCTCGATTCTGGCGTTCGGGAGTCCATATTCATCAACAACGCACACATCATACTGTGAAACGTTCTGAAGTGTACTTGCTGTACAGAAATGCCACAGGCCCCTATACCACTTgtgcgtttatttattttttaacttaataaataaaagcaggagGATGACTAATGCCCAATGTGGGATTatgtacattgaaattaatatattaaagaataatttaGTCTGTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K24679 HHATL; protein-cysteine N-palmitoyltransferase HHAT-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39654 lncRNA upstream 366554 5177934 ~ 5183039 (+) True G31690
TU39620 lncRNA upstream 421964 5093881 ~ 5127629 (+) True G31663
TU39572 lncRNA upstream 519498 4972972 ~ 5030095 (+) True G31622
TU39503 lncRNA upstream 801844 4747548 ~ 4747749 (+) True G31566
TU39435 lncRNA upstream 1181390 4366957 ~ 4368203 (+) False AMCG00019111
TU39782 lncRNA downstream 9117 5572772 ~ 5577699 (+) True G31799
TU39824 lncRNA downstream 186162 5749817 ~ 5750063 (+) True G31820
TU39841 lncRNA downstream 367049 5930704 ~ 5931941 (+) False AMCG00019154
TU39884 lncRNA downstream 601076 6164731 ~ 6167316 (+) True G31867
TU39889 lncRNA downstream 623737 6187392 ~ 6187723 (+) True G31872
AMCG00019146 mRNA upstream 6658 5533680 ~ 5542935 (+) True AMCG00019146
AMCG00019143 mRNA upstream 159231 5366466 ~ 5390362 (+) True AMCG00019143
AMCG00019139 mRNA upstream 223644 5320273 ~ 5325949 (+) True AMCG00019139
AMCG00019140 mRNA upstream 231537 5306413 ~ 5318056 (+) True AMCG00019140
AMCG00019141 mRNA upstream 244079 5281298 ~ 5305514 (+) True AMCG00019141
AMCG00019148 mRNA downstream 2641 5566296 ~ 5570536 (+) True AMCG00019148
AMCG00019151 mRNA downstream 110322 5673977 ~ 5685061 (+) True AMCG00019151
AMCG00019154 mRNA downstream 367053 5930708 ~ 5939597 (+) True AMCG00019154
AMCG00019156 mRNA downstream 405787 5969442 ~ 5980521 (+) True AMCG00019156
AMCG00019159 mRNA downstream 748093 6311748 ~ 6312120 (+) True AMCG00019159
TU39314 other upstream 2338910 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 2338910 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 2453167 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 3402030 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 1856846 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 2781800 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 2781800 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 3697719 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 3765824 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032156 True 2060 mRNA 0.45 12 NC_007113.7 21337813 ~ 21352101 (-)
grasscarp (Ctenopharyngodon idella) CI01000004_07075959_07081717.mRNA True 3305 mRNA 0.41 9 CI01000004 7074308 ~ 7081841 (+)