G31799


Basic Information

Item Value
gene id G31799
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5572772 ~ 5577699 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU39782
TGTTTggaataatatatatctatattgtttaatattgaaAGGAATCATTTCTCTCTTTCCTGTGTTACAGACACTATACACTAggcaatacaataaatgacataaaatATAGACTAATAGTATTAGCACCTCTAGACACAATCGtccttgtattgtttttattctccgTTTATATAACCACAACAGCTACGGCCTACATGTAGTCTATGTACACGCGCGTTAACTAAGACATTGTGTTTACTTAGTAAAATATAGAATCAGCATACAGAGacctgacacacacatatgatTGACTTACTAAATCAGGATCAGGAGGGCGGCATGGGGGCAAGGCTTGAAATTACCAATTGAATCCCCTCAGGCTACCAAAATActggtttattttaagattttgatTGAAGTCAGTAGTACTGAAGCCTAGGTGACCATgaaagtgcttttctttttttcttttcttctgtttcccCTTAAATAAACTTAACACTGAATGAAAGTGACCATTATGCAATCTTAAAAGTGCACTAAACATTTAAAGTGCCTAGCTCACTTGTTTAAACATACGTCTGGACCAAATCAACATTTTGAGGAACCTGCCAATCTCAGATTATAATTACGGTATTCAATGGCAGCTTATTGTAGAGGCATCTTCCTGCTATCCAACACAAACGTGCCCTCAGCTACTGTGCCGTGTGTTGTGAGTGGCAGCcaggtcaaagctttgatttggtcaGGGCTTTAATTCAATCTCTATTGGAATTCCTCTTTCACACATCTGGCGGTCGACTGattacaagcaaaaacaaacaaacaaaaacaacacaaaaacaatgttgtaGTACGCAAACTCATCCGGTTCACAATTTCCTCAGCCAGCTtttgatatatattgtgtttcttCTATTATATAAACATGTCTCCGTCAAGTCACAACCCTTTATATACAGGTTAGCTTTATATAATTCTGGGACACAAGTACAGCCATGATAAAAACCCAGTTGCTTGGACTGGTTTaaccattaaacaaacaaacaaacaaacaaaacaacaaaataaaattattttggtTTGGGTACAAAGGCCACAGAAGTCAGTCACACAGGGTATAAACCCCAACTAGCAGCAAAAACCCAAGACACAAATTTAAACACCAGTTACCATATAAAACATCCCATGTAAACTTCTCACAGGTATAGGCACAAAATGCTATTGttttccaataaaacaaaataacatttctttGTTCCTTCTTTCACAAAAAAATGCACTTGCTATTGTTCAAAAATGTCTCTACACTGTACAGGTCAGTCCACTTGAATAACAACAGACACAGGATAACTGGGTGTTTAACTCTGAAATTATATATGCTTAATAaggaattattaataataaatgtctattttttaagCGTATTTCTGTAACCAAATTATTAGTAAaatccacaaacaaaaaacaattgttaaatttcctttaaaaataaaataaaaactggaatttcaatacatgtatttttcatatatatttatatatatatattttttttttttacagatcaCATACTTTCCCTCTACTTTTTTGCTGACAGTAGCAGTGTTAGCAAAACTTTAcatcaatgttttgtcacattttatCAAACACACAAGTCTAAGACAAGTCATAGGAAGATCGTTAGAAACCCTGTTTACAAAAATGTGACCGCTTCTCCAAACTATTCAGGGCCAGAAAAGGACAAGGTTGTATAAAAGCATTAACAAAGTACAAGTAAGCTTCaagtgcattaatttatttgtttaaccatCCAGCtttgtgaaaaaatgaaaaagaaaaaatgaaaagaaaaaaggtgagAGCTATAGCTTTAGGAGTTTCTTAAAGACCAAGGTCCtacctgaaaacaaacaaataaacagtaattagCCGACACTAATATGTCCACTCGGATCACAATACAACACCTCTGGTAACGTTTCTGCTCGTGTAACGACACCTCCTCATTACTGAATACGATTACTTTCACTGACCATAAAAGGACAACAGATCTAACACATATATTATTGTTGGATAATAAAAAGAAGGAAGcctaattcattttcatttatttgtagcAGACTATAAAAAAGCACTCCTATAGAAGGAGGGGAATTCCTTTAAGGGAtgaattggaaatgttttttttctgttgttgtttgtttaatatgacTGGAAAATGTTCTTAGTCTAAACTGTCTGACTCAGGAAAGCTTTGAAAGTTCTTCATCTGAAGActcattatttcaaattgtgcTAGAATGGGAGGTGTTTTTTGCAGTATATATTAAAGTGCATTTGGAGCTAACCTAAGATCACCAAAAGACCACTGGGAATGATTTTAACTGACCGCAGAAATAAACAGTTCAAAAGACGTTCTGCTCTgcaattgattatttaaattgtcattcccagtatcataACAGTAAAGgagataaaatgtaaaattcttcaatgaaaaataatttgttagtAAGTACATATGTGTGGTTTGAAATTATCACTGCCATTTACCTTATACAAGATTGTGTAACaatggggagaaaaacaaatgttgtttctacatatattttaaagattaatctGTTACTTTATAGTtcaaattgttatttataattaaaatacagcataCACTATTTGAAGTGCATGTCAATAAAGCAAATTCTCCAGCATTTATTGTTATTGAGACGGCGGCGCTAAGCAGCTTTTTGTGGGCCTAGATAATGTGTCACCACGCATCTGTAACTCCTCATTcccaaagagaaaaataatgtgctttttttatagCACCCCAAACCGGAGAACTATCATATAGCCAAggctcaaacaaacaaagaaaaacagaaaacatgataATAGCAGTTTTGGACTTCAATTCTGTTGTGTGCATGATTCTCGTTGTAGCTCAGTTTTAACACATGGGTTTGGTTCTTGAGGACCATCAGCTATTCGTCTACACAATACTCCTAGCATAACTTGCTCAGATGACATTCACTGCCAAAGACCACAATCCTCTCTGTTTTAGGTCTTCTCTCATCCTAAttgcacatatttaaatatatatatttgtgaaaagCAACAACATAAGTTCTAGAATGCTATATGCACTACATCACACTTAAGATCTGCTACATAGAAGGACAAATCAGAGATGAGAAAAGTTTGCCACCTCTACAActttgatttgtataatttgtgggtttgtttgtttgtttgttttacataagaataactttcTTTAAATTAACCTAACAGCTTAAAATGGGACACTGAGTCAGGTTCCATCCAACTCATTGTAATATACCTGatggcacaaaacaaaactaacaaatagcTTAGGAGAGCAATGGGAATTAATTCTGCATGTGGAGCTCATGGGGGCGATGTTGCTCTACAAGATAAAGTGCATCCACCCCTGTAGCACTGGCGTGTTGTAGAGTCCAACCATCGGTGCCCAGACATCCTCACAGTCGCACATGCCAGCTGTGGTGAACATTGTAGCACATCTTCTTCTCTCCACCAAGGGATTTTCAAAAAGATTCAAAGGCATAACATCCCCAGACAACAGCCACAGCACTTCAGACCAGACATCCACATCCACGCAGCCatcaggagaaaacaaaactgaagtaTTTCCTTAAAATATTGATATCAATCCACAGTTACAGATCTCTTACTCCTGCAGCTGCAATCACATTTAAGCTGCTGTAGGGGGCCCCATTTCTCCattatattattactactacagtATAAGGTGCATGAGCATTTTTTAACTAACTTATTACAGCTTATTACTGAAAGAAAAGCTTATCCACAACTCTCCAAGCCTTTCAGTaccaaaatacaatacaataacacattCACTATTCTCTTAGAACTATGTAAACAAGGGGGAAACAGTTTGACTGAAGATAATTGCGTTTCATTCATATACACAAAAGCATATGAACACATGTGTGCATGTAAGcatgtatgtacacacatactaacacaagcacacacacccctacaCTTGTGTGTAAATACTGCACCACAGATCCAGTACATGAGGGCTTTTGCGTCACCCTCCAAACAAACACTTTTGAAAGGAAGCGTAATGTCTTTGAATTTAGCATCCTCTGAAACACGAAACCCAATTACGAACTCGGGATTAAAACATTGCATGTGTGAAGCTTATCCTTGAACCTCATTATTACGTTTGTCATAAAAGTGCATGTGTCTCAAGAAAATTGCACTTATTTCTGGGGAGTCTGTCCCCATTGCACAGGCTTTTACAGTAActacacaaacattttcagcCTGCGAGACGCTAACAAGGTACCATACCAGGTTTAAGGAGCCCTGTTACAGGGTCTGGGTTCTGTCCTTTTAAGACTGTTGTATTTCAATATAAGTGACTTGTAGTGTGATACAATCATATCCACTCACCAAACAGTCACCGCAGCTGTAATGTTTAAGCAGAGCTTTCTTTGCTCTGTGCAGAACACCAAAATGGTTTCAGAATTAACTGCAACTTACTGTACAAAACAAAGAGATAAAACTGCTTCATAATGCACCTGTGCTGAGCACATTTGTTATAGGTGGTAACAAATATCAAACAACTTTTTGCTATTCGAATtactataaaaaatattgtaaatggtATTTGGACAGAAATAGTTTCTAGAAAGACACTAAGAACACTATAACATTGGCAGATCTATACACTACATTTGAGTGGATGCAGCTTTAGTGAACCAGTCTGCACACATTTCCTTTTATCAATACCATGCTAAAGTCTCTGGATCATAAATCATATCAAAATACAAGTCACAAGGCAGactcacaattaaaaaaaaaaaaaatgttttgcatcatGATTGGAAACTAAAGTTTGATGTAACTTATAACACCAACAGGAAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39782 True 4928 lncRNA 0.35 1 5572772 5577699

Neighbor

gene id symbol gene type direction distance location
AMCG00019148 NA coding upstream 2236 5566296 ~ 5570536 (+)
AMCG00019147 hhatla,hhatl,LOC107718176,LOC107688529,LOC107722653,LOC107689424 coding upstream 9117 5549593 ~ 5563655 (+)
AMCG00019146 gars,LOC102797257,LOC107591252,LOC103132552 coding upstream 29837 5533680 ~ 5542935 (+)
AMCG00019143 NA coding upstream 182410 5366466 ~ 5390362 (+)
AMCG00019139 acaa1,LOC102793903 coding upstream 246823 5320273 ~ 5325949 (+)
AMCG00019151 NA coding downstream 96278 5673977 ~ 5685061 (+)
AMCG00019156 NA coding downstream 391743 5969442 ~ 5980521 (+)
AMCG00019159 crhr2 coding downstream 734049 6311748 ~ 6312120 (+)
AMCG00019160 crhr2,LOC102776588,LOC106599903 coding downstream 777561 6355260 ~ 6380345 (+)
AMCG00019162 pth1r,LOC107671674,LOC106599896,LOC107660418 coding downstream 907379 6485078 ~ 6566493 (+)
G31690 NA non-coding upstream 389733 5177934 ~ 5183039 (+)
G31663 NA non-coding upstream 445143 5093881 ~ 5127629 (+)
G31622 NA non-coding upstream 542677 4972972 ~ 5030095 (+)
G31566 NA non-coding upstream 825023 4747548 ~ 4747749 (+)
G31461 NA non-coding upstream 1708168 3864189 ~ 3864604 (+)
G31820 NA non-coding downstream 172118 5749817 ~ 5750063 (+)
G31867 NA non-coding downstream 587032 6164731 ~ 6167316 (+)
G31872 NA non-coding downstream 609693 6187392 ~ 6187723 (+)
G31873 NA non-coding downstream 610736 6188435 ~ 6188700 (+)
G31874 NA non-coding downstream 611610 6189309 ~ 6189552 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 1204569 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 2361882 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 2472601 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 2954720 2520104 ~ 2618052 (+)
G31110 NA other upstream 3425209 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 353005 5930704 ~ 5939597 (+)
G32005 NA other downstream 1842802 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 2767756 8345455 ~ 8384592 (+)
G32286 NA other downstream 3683675 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 3751780 9329479 ~ 9348819 (+)

Expression


Co-expression Network